Variant report

Variant	rs9829685
Chromosome Location	chr3:156704742-156704743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156704682..156706222-chr3:156712556..156714085,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1032041	0.96[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1032044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10936045	0.84[CHB][hapmap]
rs10936054	0.96[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936055	0.96[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11706305	0.85[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715321	0.82[JPT][hapmap]
rs11716210	0.81[CHB][hapmap]
rs11720579	0.82[JPT][hapmap]
rs11920497	0.89[CHB][hapmap]
rs12636741	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12638952	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1384541	0.82[JPT][hapmap]
rs1482855	0.82[JPT][hapmap]
rs1482856	0.83[JPT][hapmap]
rs1482866	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1600978	1.00[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1842840	0.82[JPT][hapmap]
rs2046270	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35354535	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4680332	0.82[JPT][hapmap]
rs6799034	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7612970	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7616314	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7624328	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7637445	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9811993	0.84[JPT][hapmap]
rs9818874	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9841461	0.82[CHB][hapmap]
rs9867766	0.82[JPT][hapmap]
rs9878410	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156704200-156705200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156704200-156705400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:156704400-156704800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:156704400-156705200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:156704600-156705200	Enhancers	HUES6 Cell Line	embryonic stem cell

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