Variant report

Variant	rs1482856
Chromosome Location	chr3:156754441-156754442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1032041	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1032042	0.80[EUR][1000 genomes]
rs1032044	0.88[JPT][hapmap]
rs10936054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936057	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10936060	0.86[EUR][1000 genomes]
rs11715321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11719102	0.91[ASN][1000 genomes]
rs11720579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12636394	0.96[ASN][1000 genomes]
rs12636741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12638952	0.93[ASN][1000 genomes]
rs13082176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1384541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1384542	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1482854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1482855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1482857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1482859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482866	0.92[ASN][1000 genomes]
rs1600976	0.80[EUR][1000 genomes]
rs1600978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1842840	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1905208	0.80[EUR][1000 genomes]
rs2046269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2046270	0.96[ASN][1000 genomes]
rs2128535	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2128536	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2220051	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2321459	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28564228	0.96[ASN][1000 genomes]
rs35354535	0.96[ASN][1000 genomes]
rs35626159	0.97[ASN][1000 genomes]
rs4263246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4680332	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4680333	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680334	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680337	0.88[JPT][hapmap]
rs6441109	0.88[EUR][1000 genomes]
rs6765256	0.95[EUR][1000 genomes]
rs6774012	0.81[EUR][1000 genomes]
rs6797982	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6799034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7612970	0.88[JPT][hapmap]
rs7616314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs7624328	0.89[JPT][hapmap]
rs7637445	0.96[ASN][1000 genomes]
rs922865	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs931245	0.96[ASN][1000 genomes]
rs9811993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9812759	0.94[JPT][hapmap]
rs9818123	0.95[ASN][1000 genomes]
rs9818500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818874	0.96[ASN][1000 genomes]
rs9829685	0.83[JPT][hapmap]
rs9838466	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9852415	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9859727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9867766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156751400-156761200	Weak transcription	Colon Smooth Muscle	Colon

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