Variant report

Variant	rs6797982
Chromosome Location	chr3:156783095-156783096
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156778985..156781470-chr3:156781540..156783699,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10936057	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs10936060	0.87[EUR][1000 genomes]
rs11719102	0.81[EUR][1000 genomes]
rs13082176	0.82[CEU][hapmap]
rs1384542	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs1482856	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1482857	0.82[CEU][hapmap]
rs1482859	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2046273	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2128536	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2321459	0.91[EUR][1000 genomes]
rs4680333	0.91[EUR][1000 genomes]
rs4680334	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs6441109	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6765256	0.90[EUR][1000 genomes]
rs7626027	0.96[AFR][1000 genomes]
rs922864	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922865	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs931245	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs931246	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790244	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9818500	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9838466	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs9852415	0.88[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156780800-156784200	Enhancers	Brain Substantia Nigra	brain
2	chr3:156780800-156785200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:156781000-156784200	Enhancers	Brain Anterior Caudate	brain
4	chr3:156781200-156783200	Enhancers	Brain Hippocampus Middle	brain
5	chr3:156781200-156784200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr3:156781200-156785400	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:156781400-156783200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:156781400-156783400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:156781400-156784600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr3:156781400-156785200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:156781600-156784000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr3:156781600-156785400	Enhancers	Brain Angular Gyrus	brain
13	chr3:156781600-156785800	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:156781800-156784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:156782000-156783400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:156782000-156783400	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:156782000-156783600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr3:156782000-156784000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr3:156782000-156787200	Enhancers	Fetal Thymus	thymus
20	chr3:156782200-156783600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:156782200-156783800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:156782200-156784200	Weak transcription	NH-A	brain
23	chr3:156782200-156784600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:156782400-156783400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr3:156782400-156783600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:156782400-156783800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:156782400-156783800	Weak transcription	Fetal Brain Male	brain
28	chr3:156782400-156784000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:156782400-156784200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:156782400-156784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:156782400-156787600	Weak transcription	Stomach Mucosa	stomach
32	chr3:156782400-156794000	Weak transcription	Right Atrium	heart
33	chr3:156782600-156783400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:156782600-156783400	Enhancers	GM12878-XiMat	blood
35	chr3:156782600-156783600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:156782600-156784600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:156782600-156784600	Weak transcription	Fetal Brain Female	brain
38	chr3:156782600-156784600	Weak transcription	K562	blood
39	chr3:156782600-156784800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:156782600-156795000	Weak transcription	Fetal Heart	heart
41	chr3:156782800-156783200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr3:156782800-156783400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:156782800-156783800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr3:156782800-156784200	Weak transcription	Brain Germinal Matrix	brain
45	chr3:156782800-156784400	Weak transcription	Primary B cells from cord blood	blood
46	chr3:156782800-156784600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
47	chr3:156782800-156787600	Weak transcription	Fetal Intestine Large	intestine
48	chr3:156782800-156789400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:156782800-156795000	Weak transcription	Adipose Nuclei	Adipose
50	chr3:156783000-156783200	Enhancers	Fetal Muscle Leg	muscle

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