Variant report

Variant	rs922864
Chromosome Location	chr3:156780866-156780867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156778985..156781470-chr3:156781540..156783699,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032042	1.00[CHB][hapmap]
rs10936057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10936058	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11719102	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13082176	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1384542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1482857	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1482860	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1482863	1.00[CHB][hapmap]
rs1552194	1.00[CHB][hapmap]
rs1600976	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2046273	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2128536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2220051	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2321459	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4574238	1.00[CHB][hapmap]
rs4680326	1.00[CHB][hapmap]
rs4680328	0.82[JPT][hapmap]
rs4680334	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6441106	0.82[JPT][hapmap]
rs6441107	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6769719	1.00[CHB][hapmap]
rs6774012	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6797982	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616559	1.00[CHB][hapmap]
rs7626027	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs931245	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs931246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9812759	0.81[AMR][1000 genomes]
rs9838466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9839037	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9840284	1.00[CHB][hapmap]
rs9842862	1.00[CHB][hapmap]
rs9852415	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9875244	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9880927	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156778400-156782200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156779800-156781600	Weak transcription	Fetal Brain Male	brain
3	chr3:156780400-156781400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:156780400-156781400	Weak transcription	Stomach Mucosa	stomach
5	chr3:156780800-156781600	Enhancers	GM12878-XiMat	blood
6	chr3:156780800-156782400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:156780800-156782800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:156780800-156784200	Enhancers	Brain Substantia Nigra	brain
9	chr3:156780800-156785200	Enhancers	Cortex derived primary cultured neurospheres	brain

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