Variant report

Variant	rs931245
Chromosome Location	chr3:156781395-156781396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156778985..156781470-chr3:156781540..156783699,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1032041	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1032044	0.88[JPT][hapmap]
rs10936054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10936055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10936058	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11715321	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11719102	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11720579	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12636394	0.94[ASN][1000 genomes]
rs12636741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12638952	0.91[ASN][1000 genomes]
rs13082176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1384541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1482854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1482855	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1482856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1482857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1482859	0.96[ASN][1000 genomes]
rs1482866	0.90[ASN][1000 genomes]
rs1600978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1842840	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2046269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2046270	0.94[ASN][1000 genomes]
rs2046273	0.88[AMR][1000 genomes]
rs2128535	0.80[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs2220051	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28564228	0.94[ASN][1000 genomes]
rs35354535	0.94[ASN][1000 genomes]
rs35626159	0.93[ASN][1000 genomes]
rs4263246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4680332	0.91[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4680337	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs6797982	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6799034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7612970	0.88[JPT][hapmap]
rs7616314	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7624328	0.88[JPT][hapmap]
rs7626027	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7637445	0.94[ASN][1000 genomes]
rs922864	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs931246	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9790244	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9811993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9812759	0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9818123	0.91[ASN][1000 genomes]
rs9818500	0.96[ASN][1000 genomes]
rs9818874	0.94[ASN][1000 genomes]
rs9829685	0.82[JPT][hapmap]
rs9859727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9867766	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156778400-156782200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156779800-156781600	Weak transcription	Fetal Brain Male	brain
3	chr3:156780400-156781400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:156780400-156781400	Weak transcription	Stomach Mucosa	stomach
5	chr3:156780800-156781600	Enhancers	GM12878-XiMat	blood
6	chr3:156780800-156782400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:156780800-156782800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:156780800-156784200	Enhancers	Brain Substantia Nigra	brain
9	chr3:156780800-156785200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:156781000-156781400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:156781000-156782600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:156781000-156784200	Enhancers	Brain Anterior Caudate	brain
13	chr3:156781200-156781400	Enhancers	Fetal Heart	heart
14	chr3:156781200-156781800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:156781200-156782200	Enhancers	NH-A	brain
16	chr3:156781200-156782600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr3:156781200-156782800	Enhancers	Brain Germinal Matrix	brain
18	chr3:156781200-156783200	Enhancers	Brain Hippocampus Middle	brain
19	chr3:156781200-156784200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr3:156781200-156785400	Enhancers	Brain Cingulate Gyrus	brain

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