Variant report

Variant	rs9790244
Chromosome Location	chr3:156785767-156785768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10936058	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11719102	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13082176	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1482857	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2046273	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2220051	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6797982	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7626027	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs922864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931245	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs931246	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812759	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156781600-156785800	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:156782000-156787200	Enhancers	Fetal Thymus	thymus
3	chr3:156782400-156787600	Weak transcription	Stomach Mucosa	stomach
4	chr3:156782400-156794000	Weak transcription	Right Atrium	heart
5	chr3:156782600-156795000	Weak transcription	Fetal Heart	heart
6	chr3:156782800-156787600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:156782800-156789400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156782800-156795000	Weak transcription	Adipose Nuclei	Adipose
9	chr3:156783000-156786400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:156783200-156785800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:156783200-156785800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:156783200-156786600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:156783200-156786600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:156783200-156786800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:156783400-156788200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:156783400-156793400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:156783800-156786200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:156784000-156786600	Enhancers	Thymus	Thymus
19	chr3:156784200-156786000	Enhancers	NH-A	brain
20	chr3:156784400-156788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:156784800-156787600	Weak transcription	Liver	Liver
22	chr3:156785000-156785800	Enhancers	HMEC	breast
23	chr3:156785000-156785800	Enhancers	NHEK	skin
24	chr3:156785000-156788000	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:156785000-156788400	Weak transcription	Brain Anterior Caudate	brain
26	chr3:156785200-156786200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:156785200-156787800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:156785200-156787800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:156785200-156788200	Weak transcription	HSMM	muscle
30	chr3:156785200-156788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:156785200-156791400	Weak transcription	NHLF	lung
32	chr3:156785200-156791600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:156785200-156791600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:156785200-156791600	Weak transcription	Brain Substantia Nigra	brain
35	chr3:156785200-156793400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:156785400-156786800	Weak transcription	Brain Angular Gyrus	brain
37	chr3:156785400-156787800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:156785400-156787800	Weak transcription	Osteobl	bone
39	chr3:156785400-156788400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:156785400-156788600	Weak transcription	NHDF-Ad	bronchial
41	chr3:156785400-156789600	Weak transcription	GM12878-XiMat	blood
42	chr3:156785600-156787800	Weak transcription	Fetal Muscle Trunk	muscle

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