Variant report

Variant	rs2046273
Chromosome Location	chr3:156777127-156777128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10936058	0.82[AMR][1000 genomes]
rs11719102	0.84[AMR][1000 genomes]
rs13082176	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs1482857	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs2220051	0.88[AMR][1000 genomes]
rs6797982	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7626027	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs922864	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs931245	0.88[AMR][1000 genomes]
rs931246	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9790244	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2046273	LINC00886	cis	lung	GTEx
rs2046273	C1orf114	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156777000-156777400	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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