Variant report

Variant	rs2220051
Chromosome Location	chr3:156764263-156764264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156759129..156762531-chr3:156763684..156766728,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1032041	0.97[ASN][1000 genomes]
rs10936054	0.97[ASN][1000 genomes]
rs10936055	0.97[ASN][1000 genomes]
rs10936058	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11715321	0.96[ASN][1000 genomes]
rs11719102	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720579	0.95[ASN][1000 genomes]
rs12636394	0.95[ASN][1000 genomes]
rs12636741	0.97[ASN][1000 genomes]
rs12638952	0.94[ASN][1000 genomes]
rs13082176	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384541	0.93[ASN][1000 genomes]
rs1482854	0.96[ASN][1000 genomes]
rs1482855	0.96[ASN][1000 genomes]
rs1482856	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1482857	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482859	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1482866	0.93[ASN][1000 genomes]
rs1600978	0.97[ASN][1000 genomes]
rs1842840	0.93[ASN][1000 genomes]
rs2046270	0.97[ASN][1000 genomes]
rs2046273	0.88[AMR][1000 genomes]
rs28564228	0.95[ASN][1000 genomes]
rs35354535	0.97[ASN][1000 genomes]
rs35626159	0.96[ASN][1000 genomes]
rs4263246	0.89[ASN][1000 genomes]
rs4680332	0.84[ASN][1000 genomes]
rs6799034	0.94[ASN][1000 genomes]
rs7616314	0.94[ASN][1000 genomes]
rs7626027	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7637445	0.97[ASN][1000 genomes]
rs922864	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs931245	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931246	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9790244	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9811993	0.93[ASN][1000 genomes]
rs9818123	0.94[ASN][1000 genomes]
rs9818500	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9818874	0.97[ASN][1000 genomes]
rs9859727	0.96[ASN][1000 genomes]
rs9867766	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156763600-156764800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:156763800-156764800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:156764000-156764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:156764000-156765600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:156764000-156766000	ZNF genes & repeats	GM12878-XiMat	blood
6	chr3:156764200-156764600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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