Variant report

Variant	rs931246
Chromosome Location	chr3:156784003-156784004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10936058	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11719102	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13082176	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1482857	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2046273	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2220051	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6797982	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7626027	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs922864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931245	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9790244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812759	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156780800-156784200	Enhancers	Brain Substantia Nigra	brain
2	chr3:156780800-156785200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:156781000-156784200	Enhancers	Brain Anterior Caudate	brain
4	chr3:156781200-156784200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr3:156781200-156785400	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:156781400-156784600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr3:156781400-156785200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:156781600-156785400	Enhancers	Brain Angular Gyrus	brain
9	chr3:156781600-156785800	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:156782000-156787200	Enhancers	Fetal Thymus	thymus
11	chr3:156782200-156784200	Weak transcription	NH-A	brain
12	chr3:156782200-156784600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:156782400-156784200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:156782400-156784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:156782400-156787600	Weak transcription	Stomach Mucosa	stomach
16	chr3:156782400-156794000	Weak transcription	Right Atrium	heart
17	chr3:156782600-156784600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:156782600-156784600	Weak transcription	Fetal Brain Female	brain
19	chr3:156782600-156784600	Weak transcription	K562	blood
20	chr3:156782600-156784800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:156782600-156795000	Weak transcription	Fetal Heart	heart
22	chr3:156782800-156784200	Weak transcription	Brain Germinal Matrix	brain
23	chr3:156782800-156784400	Weak transcription	Primary B cells from cord blood	blood
24	chr3:156782800-156784600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
25	chr3:156782800-156787600	Weak transcription	Fetal Intestine Large	intestine
26	chr3:156782800-156789400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:156782800-156795000	Weak transcription	Adipose Nuclei	Adipose
28	chr3:156783000-156786400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:156783200-156784200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr3:156783200-156785800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:156783200-156785800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:156783200-156786600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:156783200-156786600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:156783200-156786800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr3:156783400-156784400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:156783400-156784400	Weak transcription	GM12878-XiMat	blood
37	chr3:156783400-156785200	Enhancers	Primary T cells from cord blood	blood
38	chr3:156783400-156785200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:156783400-156785400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr3:156783400-156788200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:156783400-156793400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:156783600-156784200	Enhancers	Brain Hippocampus Middle	brain
43	chr3:156783600-156785400	Enhancers	HSMMtube	muscle
44	chr3:156783600-156785600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr3:156783800-156785200	Enhancers	Fetal Brain Male	brain
46	chr3:156783800-156785200	Enhancers	HSMM	muscle
47	chr3:156783800-156785400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:156783800-156785400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr3:156783800-156786200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr3:156784000-156784200	Enhancers	Pancreatic Islets	Pancreatic Islet

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