Variant report

Variant	rs11708245
Chromosome Location	chr3:68796156-68796157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11128088	0.93[ASN][1000 genomes]
rs11128103	1.00[YRI][hapmap]
rs11706249	0.91[AMR][1000 genomes]
rs11717220	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13320444	0.86[AMR][1000 genomes]
rs13321204	0.86[AMR][1000 genomes]
rs1354440	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1387729	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1387730	0.86[AMR][1000 genomes]
rs1387732	0.81[AMR][1000 genomes]
rs1387733	0.81[AMR][1000 genomes]
rs1504295	0.87[AFR][1000 genomes]
rs1602197	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1602198	0.91[AMR][1000 genomes]
rs1602201	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17048119	1.00[YRI][hapmap]
rs2130437	0.87[AMR][1000 genomes]
rs28475377	0.81[AMR][1000 genomes]
rs28758872	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4632549	0.88[AMR][1000 genomes]
rs62254083	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62254085	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62254087	0.88[AMR][1000 genomes]
rs62254089	0.91[AMR][1000 genomes]
rs62254091	0.86[AMR][1000 genomes]
rs6764338	0.87[AFR][1000 genomes]
rs7648643	0.88[AMR][1000 genomes]
rs9310132	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs971381	0.85[AFR][1000 genomes]
rs9817600	0.88[AMR][1000 genomes]
rs9822359	0.86[AMR][1000 genomes]
rs9824091	0.86[AMR][1000 genomes]
rs9826485	0.82[AFR][1000 genomes]
rs9835691	0.85[AMR][1000 genomes]
rs9840400	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9850052	0.81[AMR][1000 genomes]
rs9851134	0.88[AMR][1000 genomes]
rs9851941	0.86[AMR][1000 genomes]
rs9866307	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9867467	0.86[AMR][1000 genomes]
rs9882142	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11708245	FRMD4B	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68789400-68801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68795200-68797000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:68796000-68796200	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links