Variant report

Variant	rs971381
Chromosome Location	chr3:68761244-68761245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11128088	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11128103	1.00[YRI][hapmap]
rs11708245	0.85[AFR][1000 genomes]
rs13084200	0.81[EUR][1000 genomes]
rs1354440	0.82[AFR][1000 genomes]
rs1504295	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1504296	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17048119	1.00[YRI][hapmap]
rs6764338	0.82[AFR][1000 genomes]
rs6772391	0.81[EUR][1000 genomes]
rs6804831	0.84[LWK][hapmap]
rs7614404	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9310118	0.84[LWK][hapmap]
rs9826485	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9840400	0.85[AFR][1000 genomes]
rs9878555	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878718	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3863	chr3:68720921-68769064	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv508224	chr3:68724528-68762976	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs971381	ITGB7	trans	parietal	SCAN
rs971381	MITF	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68759600-68765800	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links