Variant report

Variant	rs11709127
Chromosome Location	chr3:20228009-20228010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:490)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:490 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:20227458-20228272	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr3:20227349-20228294	U87	brain:	n/a	n/a
3	IRF1	chr3:20227074-20228463	K562	blood:	n/a	chr3:20228107-20228127 chr3:20227111-20227120 chr3:20228111-20228125
4	FOS	chr3:20227633-20228139	MCF10A-Er-Src	breast:	n/a	n/a
5	GATA1	chr3:20227061-20228485	PBDE	blood:	n/a	n/a
6	POLR2A	chr3:20227391-20228208	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr3:20227372-20228179	HCT-116	colon:	n/a	n/a
8	TAF7	chr3:20227349-20228146	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr3:20227799-20228122	GM12892	blood:	n/a	n/a
10	SIN3AK20	chr3:20227143-20228342	HCT-116	colon:	n/a	n/a
11	CTCF	chr3:20227960-20228110	HPF	lung:	n/a	n/a
12	TAF1	chr3:20227237-20228320	K562	blood:	n/a	n/a
13	NFYA	chr3:20227491-20228233	Hela-S3	cervix:	n/a	n/a
14	REST	chr3:20227370-20228119	A549	lung:	n/a	n/a
15	E2F6	chr3:20227378-20228116	H1-hESC	embryonic stem cell:	n/a	chr3:20227701-20227712
16	FOS	chr3:20227575-20228066	MCF10A-Er-Src	breast:	n/a	n/a
17	MYC	chr3:20227059-20228376	NB4	blood:	n/a	n/a
18	ELF1	chr3:20227263-20228269	HepG2	liver:	n/a	chr3:20227453-20227464
19	BHLHE40	chr3:20227454-20228139	HepG2	liver:	n/a	n/a
20	POLR2A	chr3:20226919-20228378	HEK293	kidney:	n/a	n/a
21	POLR2A	chr3:20227278-20228242	K562	blood:	n/a	n/a
22	MAX	chr3:20227136-20228244	HepG2	liver:	n/a	n/a
23	USF1	chr3:20227412-20228027	GM12878	blood:	n/a	chr3:20227739-20227750
24	ETS1	chr3:20227201-20228255	GM12878	blood:	n/a	chr3:20227345-20227358
25	TAF1	chr3:20227589-20228169	H1-neurons	neurons:	n/a	n/a
26	POLR2A	chr3:20226876-20228329	K562	blood:	n/a	n/a
27	STAT5A	chr3:20227164-20228516	K562	blood:	n/a	n/a
28	USF2	chr3:20227410-20228139	HepG2	liver:	n/a	chr3:20227739-20227750
29	PAX5	chr3:20227416-20228085	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:20226939-20228370	K562	blood:	n/a	n/a
31	RCOR1	chr3:20227551-20228078	HepG2	liver:	n/a	n/a
32	POLR2A	chr3:20227470-20228070	HepG2	liver:	n/a	n/a
33	YY1	chr3:20227162-20228246	GM12878	blood:	n/a	chr3:20228186-20228195
34	ELF1	chr3:20227238-20228219	MCF-7	breast:	n/a	chr3:20227453-20227464
35	SIN3AK20	chr3:20227263-20228273	HCT-116	colon:	n/a	n/a
36	HA-E2F1	chr3:20226920-20228379	MCF-7	breast:	n/a	n/a
37	PAX5	chr3:20227426-20228119	GM12878	blood:	n/a	n/a
38	TAF1	chr3:20227331-20228133	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAX	chr3:20226941-20228310	HCT-116	colon:	n/a	n/a
40	BRCA1	chr3:20227654-20228038	HepG2	liver:	n/a	n/a
41	HEY1	chr3:20227472-20228113	HepG2	liver:	n/a	n/a
42	NFIC	chr3:20227326-20228182	HepG2	liver:	n/a	n/a
43	TAF1	chr3:20227078-20228308	A549	lung:	n/a	n/a
44	JUND	chr3:20226909-20228407	K562	blood:	n/a	n/a
45	CTCF	chr3:20227980-20228083	GM19240	blood:	n/a	n/a
46	CREB1	chr3:20226769-20228336	K562	blood:	n/a	n/a
47	RFX5	chr3:20227492-20228312	HepG2	liver:	n/a	n/a
48	TCF7L2	chr3:20227376-20228151	HCT-116	colon:	n/a	chr3:20227969-20227978
49	CTCF	chr3:20227960-20228110	AoAF	blood vessel:	n/a	n/a
50	SIN3A	chr3:20226856-20228309	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:20227831..20229515-chr3:20229924..20231692,2	MCF-7	breast:
2	chr3:20197490..20199260-chr3:20227955..20230018,2	K562	blood:
3	chr3:19985145..19990136-chr3:20225418..20228312,6	K562	blood:
4	chr3:19987439..19992261-chr3:20226257..20229350,4	K562	blood:
5	chr3:20225377..20229978-chr3:20232761..20235716,5	K562	blood:
6	chr3:20188934..20192869-chr3:20226143..20228338,3	MCF-7	breast:
7	chr3:20213813..20216501-chr3:20227432..20229116,2	MCF-7	breast:
8	chr3:20226448..20228980-chr3:20231144..20234755,4	MCF-7	breast:
9	chr3:20212661..20217850-chr3:20224065..20229766,9	K562	blood:
10	chr3:20227400..20228150-chr9:16726744..16727510,2	Hela-S3	cervix:
11	chr3:20215671..20219222-chr3:20225067..20228168,4	MCF-7	breast:
12	chr1:211431812..211432720-chr3:20227589..20228353,2	Hela-S3	cervix:
13	chr3:20094893..20096727-chr3:20227964..20230863,2	MCF-7	breast:
14	chr3:20211282..20213997-chr3:20225429..20228054,3	MCF-7	breast:
15	chr3:20079279..20082964-chr3:20226299..20229620,6	K562	blood:
16	chr3:20079527..20082964-chr3:20226742..20229620,4	K562	blood:
17	chr2:97426251..97427245-chr3:20227662..20228331,2	Hela-S3	cervix:
18	chr3:20227937..20230614-chr3:20238703..20240365,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KAT2B-1	chr3:20227726-20230848	NONHSAT088617

No data

Variant related genes	Relation type
SGOL1	TF binding region
ENSG00000234779	Chromatin interaction
ENSG00000117625	Chromatin interaction
ENSG00000129810	Chromatin interaction
ENSG00000158158	Chromatin interaction
ENSG00000114166	Chromatin interaction
ENSG00000163576	Chromatin interaction
ENSG00000237485	Chromatin interaction
ENSG00000252442	Chromatin interaction
ENSG00000144566	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10514674	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs10865760	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs11713727	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs11717832	0.84[ASN][1000 genomes]
rs11717876	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs1395987	0.82[EUR][1000 genomes]
rs1395988	0.82[EUR][1000 genomes]
rs17006708	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs17006728	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17627906	0.82[EUR][1000 genomes]
rs17627936	0.82[EUR][1000 genomes]
rs4857929	0.82[EUR][1000 genomes]
rs4858173	0.92[EUR][1000 genomes]
rs4858771	0.83[ASN][1000 genomes]
rs4858772	0.83[ASN][1000 genomes]
rs4858773	0.84[ASN][1000 genomes]
rs55752419	0.88[EUR][1000 genomes]
rs55812129	0.82[EUR][1000 genomes]
rs55919884	0.84[ASN][1000 genomes]
rs56060128	0.88[EUR][1000 genomes]
rs56233992	0.92[ASN][1000 genomes]
rs56296022	0.83[ASN][1000 genomes]
rs58070551	0.84[ASN][1000 genomes]
rs58086354	0.82[EUR][1000 genomes]
rs58780300	0.84[ASN][1000 genomes]
rs58959589	0.84[ASN][1000 genomes]
rs59581357	0.84[ASN][1000 genomes]
rs60290831	0.84[ASN][1000 genomes]
rs60452696	0.92[ASN][1000 genomes]
rs73175204	0.84[ASN][1000 genomes]
rs73175210	0.84[ASN][1000 genomes]
rs73175211	0.84[ASN][1000 genomes]
rs73175213	0.92[ASN][1000 genomes]
rs73175216	0.92[ASN][1000 genomes]
rs73175217	0.92[ASN][1000 genomes]
rs73175223	0.92[ASN][1000 genomes]
rs73193239	0.83[ASN][1000 genomes]
rs9835099	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1829542	chr3:20009231-20384627	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv433359	chr3:20090908-20587572	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv470450	chr3:20096735-20389045	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1001006	chr3:20110743-20752628	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv536512	chr3:20110743-20752628	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv1829018	chr3:20116077-20596244	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	esv1827700	chr3:20119716-20489086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	esv1830036	chr3:20121828-20278275	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
12	esv1830599	chr3:20121828-20375643	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	esv1828816	chr3:20136508-20389045	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	esv1832674	chr3:20152772-20605302	Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
15	esv1831853	chr3:20157077-20615273	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	esv1833208	chr3:20157077-20638228	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	esv2422249	chr3:20163608-20626956	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	esv1826144	chr3:20164282-20638228	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
19	nsv1013532	chr3:20172889-20305612	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
20	nsv536513	chr3:20172889-20305612	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
21	esv1831289	chr3:20191506-20617984	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
22	esv1829973	chr3:20192578-20375260	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
23	esv1829847	chr3:20196923-20638228	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
24	nsv876597	chr3:20197364-20242143	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	esv1829457	chr3:20200232-20375260	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	esv1830113	chr3:20200232-20430932	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	esv3377463	chr3:20203472-20343029	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	esv3381923	chr3:20203492-20342999	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11709127	SGOL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20224600-20229000	Active TSS	GM12878-XiMat	blood
2	chr3:20225800-20228600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr3:20225800-20228600	Active TSS	K562	blood
4	chr3:20225800-20228800	Active TSS	HMEC	breast
5	chr3:20225800-20229000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:20226000-20228600	Active TSS	H1 Cell Line	embryonic stem cell
7	chr3:20226000-20228600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:20226000-20228600	Active TSS	Thymus	Thymus
9	chr3:20226000-20228800	Active TSS	NHDF-Ad	bronchial
10	chr3:20226000-20229000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr3:20226000-20229000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr3:20226000-20229000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:20226200-20228800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:20226200-20228800	Active TSS	NHEK	skin
15	chr3:20226200-20229000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:20226200-20229200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr3:20226200-20229200	Active TSS	NHLF	lung
18	chr3:20226400-20228200	Active TSS	HSMM	muscle
19	chr3:20226400-20228600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:20226400-20228600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:20226400-20228600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:20226400-20228800	Active TSS	Fetal Stomach	stomach
23	chr3:20226400-20229000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:20226400-20229000	Active TSS	Fetal Intestine Large	intestine
25	chr3:20226400-20229200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:20226600-20228200	Active TSS	Fetal Muscle Leg	muscle
27	chr3:20226600-20228400	Active TSS	Placenta Amnion	Placenta Amnion
28	chr3:20226600-20228600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:20226600-20228600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr3:20226600-20228600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr3:20226600-20228800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr3:20226600-20228800	Active TSS	A549	lung
33	chr3:20226600-20229000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:20226600-20229000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:20226600-20229600	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr3:20226800-20228400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:20226800-20228400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:20226800-20228400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:20226800-20228400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:20226800-20228400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:20226800-20228400	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr3:20226800-20228400	Active TSS	Esophagus	oesophagus
43	chr3:20226800-20228400	Active TSS	Fetal Heart	heart
44	chr3:20226800-20228400	Active TSS	Fetal Lung	lung
45	chr3:20226800-20228400	Active TSS	NH-A	brain
46	chr3:20226800-20228400	Active TSS	Osteobl	bone
47	chr3:20226800-20228600	Active TSS	H9 Cell Line	embryonic stem cell
48	chr3:20226800-20228600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:20226800-20228600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:20226800-20228600	Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links