Variant report
| Variant | rs11710017 |
|---|---|
| Chromosome Location | chr3:24979746-24979747 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12629369 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12638313 | 0.81[EUR][1000 genomes] |
| rs13325698 | 0.92[ASN][1000 genomes] |
| rs13326208 | 0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2363524 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2363526 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2363528 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2363529 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2363530 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6772273 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6772493 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6774983 | 0.84[ASN][1000 genomes] |
| rs6779838 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6798808 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7614721 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7614855 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7648839 | 0.85[EUR][1000 genomes] |
| rs9812847 | 0.84[EUR][1000 genomes] |
| rs9833261 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9843036 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9843826 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9845970 | 0.84[EUR][1000 genomes] |
| rs9847199 | 0.89[EUR][1000 genomes] |
| rs9881799 | 0.85[EUR][1000 genomes] |
| rs9883836 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv589953 | chr3:24909003-25004804 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv876630 | chr3:24911917-25066711 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv834644 | chr3:24936987-25112610 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv460482 | chr3:24966768-25071616 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv589954 | chr3:24966768-25071616 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv1008974 | chr3:24968434-24992497 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24978000-24979800 | Enhancers | Fetal Lung | lung |
| 2 | chr3:24979200-24998400 | Weak transcription | Right Atrium | heart |
