Variant report
| Variant | rs6779838 |
|---|---|
| Chromosome Location | chr3:24963711-24963712 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11710017 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11712813 | 0.82[ASN][1000 genomes] |
| rs12638313 | 0.82[EUR][1000 genomes] |
| rs13326208 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2363523 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2363524 | 0.92[EUR][1000 genomes] |
| rs2363526 | 0.92[EUR][1000 genomes] |
| rs2363528 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2363529 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2363530 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6772273 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6772493 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6774983 | 0.95[ASN][1000 genomes] |
| rs6798808 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9812847 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9833261 | 0.85[EUR][1000 genomes] |
| rs9843036 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9843826 | 0.86[EUR][1000 genomes] |
| rs9845970 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9847199 | 0.84[EUR][1000 genomes] |
| rs9883836 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv589953 | chr3:24909003-25004804 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv876630 | chr3:24911917-25066711 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv834644 | chr3:24936987-25112610 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24957400-24964200 | Weak transcription | Fetal Lung | lung |
