Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11710017	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629369	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12638313	0.80[EUR][1000 genomes]
rs13325698	0.92[ASN][1000 genomes]
rs13326208	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2363524	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2363526	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2363528	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2363529	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6772273	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6772493	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6774983	0.84[ASN][1000 genomes]
rs6779838	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6798808	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7614721	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7614855	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7648839	0.87[EUR][1000 genomes]
rs9812847	0.83[EUR][1000 genomes]
rs9833261	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9843036	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9843826	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9845970	0.83[EUR][1000 genomes]
rs9847199	0.87[EUR][1000 genomes]
rs9881799	0.87[EUR][1000 genomes]
rs9883836	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1008974	chr3:24968434-24992497	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24978000-24979800	Enhancers	Fetal Lung	lung
2	chr3:24978600-24979200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:24978800-24979200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:24978800-24979200	Enhancers	Right Atrium	heart
5	chr3:24978800-24979400	Enhancers	Placenta	Placenta
6	chr3:24979000-24979400	Enhancers	Fetal Muscle Trunk	muscle

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