Variant report

Variant	rs11710396
Chromosome Location	chr3:156278785-156278786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936027	0.87[ASN][1000 genomes]
rs13068904	0.87[ASN][1000 genomes]
rs13083246	0.87[ASN][1000 genomes]
rs17354147	0.90[ASN][1000 genomes]
rs2874390	0.90[ASN][1000 genomes]
rs3773717	0.90[ASN][1000 genomes]
rs3773719	0.90[ASN][1000 genomes]
rs6764265	0.87[ASN][1000 genomes]
rs6764992	0.87[ASN][1000 genomes]
rs6771728	0.90[ASN][1000 genomes]
rs6802811	0.90[ASN][1000 genomes]
rs71310479	0.87[ASN][1000 genomes]
rs71310481	0.90[ASN][1000 genomes]
rs9837799	0.90[ASN][1000 genomes]
rs9917691	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11710396	KCNAB1	Cis_1M	lymphoblastoid	RTeQTL
rs11710396	SSR3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156273600-156280400	Weak transcription	Left Ventricle	heart
2	chr3:156273800-156281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156276400-156279200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:156277400-156280000	Weak transcription	K562	blood
5	chr3:156277800-156279000	Weak transcription	Fetal Kidney	kidney
6	chr3:156278000-156279400	Weak transcription	Fetal Heart	heart
7	chr3:156278200-156278800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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