Variant report

Variant	rs9837799
Chromosome Location	chr3:156274506-156274507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156268357..156274553-chr3:156389283..156394606,15	MCF-7	breast:
2	chr3:156274173..156275896-chr3:156288464..156290348,2	K562	blood:
3	chr3:156260735..156275674-chr3:156389736..156397850,44	K562	blood:
4	chr3:156273738..156275680-chr3:156318585..156320411,2	K562	blood:
5	chr3:156270771..156274735-chr3:156390391..156394038,18	K562	blood:
6	chr3:156273435..156275672-chr3:156891080..156893062,2	K562	blood:
7	chr3:156269857..156276442-chr3:156389324..156394083,11	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936027	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11710396	0.90[ASN][1000 genomes]
rs13068904	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13083246	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17354147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874390	1.00[ASN][1000 genomes]
rs3773717	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773719	1.00[ASN][1000 genomes]
rs6764265	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6764992	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771728	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802811	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310479	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71310481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9837799	SSR3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156273600-156276200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156273600-156276200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:156273600-156276200	Weak transcription	Pancreas	Pancrea
4	chr3:156273600-156276800	Weak transcription	Liver	Liver
5	chr3:156273600-156277000	Weak transcription	Fetal Kidney	kidney
6	chr3:156273600-156280400	Weak transcription	Left Ventricle	heart
7	chr3:156273800-156277400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:156273800-156281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156274000-156275000	Weak transcription	Fetal Heart	heart
10	chr3:156274000-156275200	Weak transcription	K562	blood
11	chr3:156274000-156276000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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