Variant report

Variant	rs71310481
Chromosome Location	chr3:156276286-156276287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr3:156276215-156276503	K562	blood:	n/a	n/a
2	CBX3	chr3:156276083-156276530	K562	blood:	n/a	n/a
3	RAD21	chr3:156276191-156276495	SK-N-SH_RA	brain:	n/a	n/a
4	GATA1	chr3:156276057-156276682	PBDE	blood:	n/a	chr3:156276351-156276358 chr3:156276351-156276358 chr3:156276344-156276365 chr3:156276428-156276436 chr3:156276351-156276358
5	MAZ	chr3:156276169-156276556	K562	blood:	n/a	n/a
6	ARID3A	chr3:156276154-156276528	K562	blood:	n/a	n/a
7	RAD21	chr3:156276203-156276427	SK-N-SH_RA	brain:	n/a	n/a
8	TEAD4	chr3:156276127-156276498	K562	blood:	n/a	n/a
9	BHLHE40	chr3:156276202-156276530	K562	blood:	n/a	n/a
10	TBL1XR1	chr3:156276190-156276522	K562	blood:	n/a	n/a
11	EP300	chr3:156276073-156276561	K562	blood:	n/a	n/a
12	TAL1	chr3:156276202-156276536	K562	blood:	n/a	n/a
13	IRF1	chr3:156276239-156276821	K562	blood:	n/a	chr3:156276487-156276500 chr3:156276487-156276500 chr3:156276485-156276499 chr3:156276487-156276500 chr3:156276481-156276501 chr3:156276489-156276503 chr3:156276486-156276500 chr3:156276346-156276360 chr3:156276487-156276501 chr3:156276489-156276499 chr3:156276489-156276500
14	RCOR1	chr3:156276126-156276574	K562	blood:	n/a	n/a
15	TEAD4	chr3:156276127-156276563	K562	blood:	n/a	n/a
16	JUND	chr3:156276177-156276517	K562	blood:	n/a	n/a
17	GATA3	chr3:156276070-156276714	SH-SY5Y	brain:	n/a	chr3:156276351-156276358 chr3:156276351-156276358 chr3:156276344-156276365 chr3:156276428-156276436 chr3:156276351-156276358
18	GATA3	chr3:156276159-156276697	SK-N-SH	brain:	n/a	chr3:156276351-156276358 chr3:156276351-156276358 chr3:156276344-156276365 chr3:156276428-156276436 chr3:156276351-156276358
19	MXI1	chr3:156275910-156276721	SK-N-SH	brain:	n/a	n/a
20	MEF2A	chr3:156276142-156276478	K562	blood:	n/a	chr3:156276401-156276415
21	MAX	chr3:156276275-156276381	K562	blood:	n/a	n/a
22	CUX1	chr3:156276143-156276591	K562	blood:	n/a	n/a
23	GATA2	chr3:156276111-156276582	SH-SY5Y	brain:	n/a	chr3:156276351-156276358 chr3:156276351-156276358 chr3:156276344-156276365 chr3:156276428-156276436 chr3:156276351-156276358
24	CEBPD	chr3:156276202-156276541	K562	blood:	n/a	n/a
25	MYC	chr3:156276263-156276539	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156270355..156274581-chr3:156274716..156279321,6	MCF-7	breast:
2	chr3:156271512..156274221-chr3:156275552..156277357,2	MCF-7	breast:
3	chr3:156270417..156274743-chr3:156274923..156279627,9	K562	blood:
4	chr3:156275181..156279220-chr3:156281237..156284848,5	K562	blood:
5	chr3:156270417..156273559-chr3:156274952..156277064,3	K562	blood:
6	chr3:156269857..156276442-chr3:156389324..156394083,11	MCF-7	breast:

Variant related genes	Relation type
SSR3	TF binding region
ENSG00000114850	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936027	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11710396	0.90[ASN][1000 genomes]
rs13068904	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13083246	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17354147	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874390	1.00[ASN][1000 genomes]
rs3773717	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773719	1.00[ASN][1000 genomes]
rs6764265	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6764992	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771728	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802811	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310479	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156273600-156276800	Weak transcription	Liver	Liver
2	chr3:156273600-156277000	Weak transcription	Fetal Kidney	kidney
3	chr3:156273600-156280400	Weak transcription	Left Ventricle	heart
4	chr3:156273800-156277400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:156273800-156281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156275200-156277400	Enhancers	K562	blood
7	chr3:156276000-156278000	Enhancers	GM12878-XiMat	blood
8	chr3:156276200-156276400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:156276200-156276400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:156276200-156276400	Flanking Active TSS	Fetal Heart	heart
11	chr3:156276200-156276400	Enhancers	Pancreas	Pancrea

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