Variant report

Variant	rs11711254
Chromosome Location	chr3:111545579-111545580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934111	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11713593	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492408	0.82[AFR][1000 genomes]
rs35803924	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35889604	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4411858	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4443148	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4555492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57919541	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58217009	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6764262	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6769535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796175	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800219	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808720	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6810112	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72936497	0.99[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72936500	0.87[AFR][1000 genomes]
rs7627606	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7629504	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
3	chr3:111542000-111545600	Weak transcription	Lung	lung
4	chr3:111543600-111546600	Weak transcription	Adipose Nuclei	Adipose
5	chr3:111543600-111546600	Weak transcription	Fetal Heart	heart
6	chr3:111543600-111546600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:111543800-111550800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:111544200-111547400	Enhancers	Placenta	Placenta
9	chr3:111544400-111556800	Weak transcription	Liver	Liver
10	chr3:111545200-111545800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:111545200-111545800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:111545200-111545800	Enhancers	NHEK	skin
13	chr3:111545200-111546200	Enhancers	HMEC	breast
14	chr3:111545400-111545800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:111545400-111546200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:111545400-111546200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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