Variant report

Variant	rs72936500
Chromosome Location	chr3:111551382-111551383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10934111	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11711254	0.87[AFR][1000 genomes]
rs35803924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4555492	0.84[AFR][1000 genomes]
rs57919541	0.82[ASN][1000 genomes]
rs6769535	0.87[AFR][1000 genomes]
rs72936497	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7629504	0.86[AFR][1000 genomes]
rs7629571	0.83[AFR][1000 genomes]
rs7652173	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3321819	chr3:111550487-111553035	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3354799	chr3:111550662-111554185	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv3435973	chr3:111551062-111553810	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3359678	chr3:111551287-111553835	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111544400-111556800	Weak transcription	Liver	Liver
3	chr3:111547600-111556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:111550400-111551400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:111550400-111551400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:111550600-111551400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:111550600-111551400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:111550600-111551400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:111550600-111551400	Enhancers	Dnd41	blood
10	chr3:111550600-111551400	Enhancers	Osteobl	bone
11	chr3:111550800-111551400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:111551200-111556200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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