Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11711254	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11713593	0.83[ASN][1000 genomes]
rs35889604	0.83[ASN][1000 genomes]
rs4411858	0.83[ASN][1000 genomes]
rs4443148	0.83[ASN][1000 genomes]
rs4555492	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57919541	0.88[ASN][1000 genomes]
rs58217009	0.83[ASN][1000 genomes]
rs6764262	0.83[ASN][1000 genomes]
rs6769535	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6785777	0.81[AFR][1000 genomes]
rs6796175	0.83[ASN][1000 genomes]
rs6800219	0.83[ASN][1000 genomes]
rs6808720	0.83[ASN][1000 genomes]
rs6810112	0.83[ASN][1000 genomes]
rs72936497	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72936500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7627606	0.83[ASN][1000 genomes]
rs7629504	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7629571	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7652173	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
3	chr3:111543800-111550800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:111544400-111556800	Weak transcription	Liver	Liver
5	chr3:111545800-111550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:111545800-111550800	Weak transcription	NHEK	skin
7	chr3:111546200-111550400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:111546200-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:111546200-111550600	Weak transcription	HMEC	breast
10	chr3:111546200-111550800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:111547600-111556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:111549000-111550800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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