The 2.0 version of rSNPBase

Variant report

Variant rs1171788
Chromosome Location chr10:61625350-61625351
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:61571400-61628000 Weak transcription Spleen Spleen
2 chr10:61583200-61640600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr10:61593200-61629400 Weak transcription Lung lung
4 chr10:61608000-61637200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr10:61610400-61628000 Weak transcription Fetal Muscle Trunk muscle
6 chr10:61614200-61629400 Weak transcription Brain Inferior Temporal Lobe brain
7 chr10:61615200-61628000 Weak transcription Esophagus oesophagus
8 chr10:61616600-61626600 Weak transcription Aorta Aorta
9 chr10:61618000-61632600 Weak transcription Muscle Satellite Cultured Cells --
10 chr10:61618400-61628600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr10:61618600-61633200 Weak transcription HSMM muscle
12 chr10:61621200-61628400 Weak transcription Fetal Intestine Large intestine
13 chr10:61621200-61630200 Weak transcription Fetal Stomach stomach
14 chr10:61621800-61628400 Weak transcription Fetal Muscle Leg muscle
15 chr10:61623600-61625600 Enhancers Duodenum Mucosa Duodenum
16 chr10:61623600-61626200 Enhancers Fetal Heart heart
17 chr10:61623800-61625800 Enhancers Liver Liver
18 chr10:61623800-61626800 Enhancers Colon Smooth Muscle Colon
19 chr10:61623800-61628000 Enhancers Primary T helper cells PMA-I stimulated --
20 chr10:61624000-61625400 Enhancers Cortex derived primary cultured neurospheres brain
21 chr10:61624000-61625600 Enhancers Psoas Muscle Psoas
22 chr10:61624000-61625800 Enhancers Left Ventricle heart
23 chr10:61624000-61626000 Enhancers Small Intestine intestine
24 chr10:61624000-61626200 Enhancers HMEC breast
25 chr10:61624000-61626600 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr10:61624000-61626800 Enhancers Sigmoid Colon Sigmoid Colon
27 chr10:61624200-61625400 Enhancers Primary B cells from cord blood blood
28 chr10:61624200-61625400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr10:61624200-61625400 Enhancers Brain Hippocampus Middle brain
30 chr10:61624200-61626000 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr10:61624200-61626000 Enhancers Fetal Thymus thymus
32 chr10:61624200-61626400 Enhancers Duodenum Smooth Muscle Duodenum
33 chr10:61624200-61626600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr10:61624200-61627000 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr10:61624200-61627000 Enhancers Primary T helper naive cells from peripheral blood blood
36 chr10:61624200-61627200 Enhancers Primary B cells from peripheral blood blood
37 chr10:61624200-61627400 Enhancers Primary T helper cells fromperipheralblood blood
38 chr10:61624200-61630400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr10:61624400-61625600 Enhancers GM12878-XiMat blood
40 chr10:61624400-61626000 Enhancers Primary T helper naive cells fromperipheralblood blood
41 chr10:61624400-61626800 Enhancers Primary T cells fromperipheralblood blood
42 chr10:61624400-61627000 Enhancers Brain Substantia Nigra brain
43 chr10:61624400-61630400 Enhancers Pancreas Pancrea
44 chr10:61624400-61632000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr10:61624600-61631200 Weak transcription Fetal Lung lung
46 chr10:61624800-61625600 Enhancers Primary T helper 17 cells PMA-I stimulated --
47 chr10:61624800-61625600 Enhancers Primary Natural Killer cells fromperipheralblood blood
48 chr10:61624800-61626200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr10:61624800-61626400 Weak transcription Brain Cingulate Gyrus brain
50 chr10:61624800-61626400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015