Variant report

Variant	rs12243564
Chromosome Location	chr10:61595840-61595841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61595408..61597026-chr10:61643896..61645826,2	MCF-7	breast:
2	chr10:61594610..61596651-chr10:61661878..61664205,2	K562	blood:
3	chr10:61593876..61596694-chr10:61598582..61600654,2	K562	blood:
4	chr10:61593800..61596584-chr10:61665153..61667297,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10458645	0.85[CEU][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10509112	0.84[CHB][hapmap];0.84[CHD][hapmap]
rs10761415	0.82[GIH][hapmap]
rs10821604	0.85[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821605	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821606	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821607	0.82[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10994051	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1171786	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs1171788	0.82[ASN][1000 genomes]
rs1177701	0.81[CEU][hapmap]
rs12259529	0.84[CHB][hapmap]
rs12262735	0.84[CHB][hapmap]
rs12266466	0.81[ASN][1000 genomes]
rs1621496	0.81[CEU][hapmap];0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs1664255	0.84[ASN][1000 genomes]
rs1664256	0.88[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs1664284	0.94[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs1664285	0.93[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs1684896	0.84[ASN][1000 genomes]
rs1709345	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1871637	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1871638	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2120989	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120990	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2271562	0.83[JPT][hapmap]
rs2458661	1.00[CEU][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2458663	0.94[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs3106569	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3844161	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3851247	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851248	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862860	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3862861	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3999569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3999570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948244	0.84[CHB][hapmap];0.84[CHD][hapmap]
rs4948372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948373	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948374	0.96[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4948375	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55842846	0.86[ASN][1000 genomes]
rs61848702	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479654	0.85[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479657	0.88[ASN][1000 genomes]
rs6479659	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479660	0.90[ASN][1000 genomes]
rs6479661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479662	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7068104	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7068247	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7070800	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074685	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7079228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7088808	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7088886	0.89[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs7894842	0.82[GIH][hapmap]
rs7908517	0.85[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7920403	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9663498	1.00[CEU][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9664183	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
3	chr10:61571600-61609200	Weak transcription	NHLF	lung
4	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
5	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
6	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
10	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
16	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
18	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
19	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:61586200-61597800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:61586400-61606600	Weak transcription	Gastric	stomach
25	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:61587000-61612000	Weak transcription	Ovary	ovary
27	chr10:61589000-61598000	Weak transcription	Right Atrium	heart
28	chr10:61589200-61599000	Weak transcription	NHDF-Ad	bronchial
29	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:61591400-61598800	Weak transcription	Osteobl	bone
31	chr10:61591600-61609400	Weak transcription	Brain Germinal Matrix	brain
32	chr10:61591800-61597000	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:61591800-61597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:61591800-61598000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:61591800-61598400	Weak transcription	Placenta	Placenta
36	chr10:61591800-61598400	Weak transcription	HSMM	muscle
37	chr10:61591800-61599000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:61591800-61600800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:61591800-61601400	Weak transcription	Fetal Stomach	stomach
40	chr10:61591800-61603200	Weak transcription	Hela-S3	cervix
41	chr10:61591800-61607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:61591800-61607600	Weak transcription	A549	lung
43	chr10:61591800-61609000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:61592000-61600400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:61592000-61601400	Weak transcription	Fetal Intestine Small	intestine
47	chr10:61592200-61597000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:61592200-61597800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:61592200-61598000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:61592200-61599000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links