Variant report

Variant	rs7894842
Chromosome Location	chr10:61572732-61572733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10458645	0.87[GIH][hapmap]
rs1053266	0.86[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10761414	0.89[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761415	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761417	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821594	0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs10821596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821597	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821600	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10821601	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821603	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994008	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10994024	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540401	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12243564	0.82[GIH][hapmap]
rs12572724	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12778666	0.81[ASN][1000 genomes]
rs1871638	0.86[GIH][hapmap]
rs1877793	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1877796	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1913512	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1913513	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1913514	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1955321	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090121	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2393572	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458661	0.82[GIH][hapmap]
rs3793880	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3844161	0.82[GIH][hapmap]
rs4387309	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948242	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948243	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948244	0.81[GIH][hapmap];0.83[MEX][hapmap]
rs4948364	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948365	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948374	0.84[GIH][hapmap]
rs58643066	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069589	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7075215	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079829	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088886	0.85[GIH][hapmap]
rs7099368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721991	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs721992	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7909766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663498	0.84[GIH][hapmap]
rs9971121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975776	chr10:61569234-61574091	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61548600-61573000	Strong transcription	Dnd41	blood
3	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
4	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
11	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
12	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:61561000-61572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:61561200-61574600	Strong transcription	HepG2	liver
18	chr10:61561600-61572800	Strong transcription	Osteobl	bone
19	chr10:61561600-61573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:61562000-61573400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:61562200-61574600	Strong transcription	Fetal Thymus	thymus
22	chr10:61562600-61573000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:61562600-61573400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:61562800-61572800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:61562800-61574200	Strong transcription	Placenta	Placenta
26	chr10:61562800-61574400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:61563000-61572800	Strong transcription	Fetal Muscle Trunk	muscle
28	chr10:61563600-61577600	Weak transcription	Right Atrium	heart
29	chr10:61564200-61576800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:61565000-61572800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:61565000-61573600	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:61566000-61572800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
35	chr10:61567600-61579200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:61568200-61582400	Weak transcription	Psoas Muscle	Psoas
37	chr10:61569000-61573000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:61569000-61574600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr10:61569200-61572800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr10:61569200-61574600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:61569400-61573000	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr10:61569400-61574000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:61569400-61574400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:61569400-61575000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:61569600-61573200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:61569600-61573600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:61569600-61574200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr10:61569600-61574400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:61569600-61574600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:61569800-61573600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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