Variant report

Variant	rs10821596
Chromosome Location	chr10:61555368-61555369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1053266	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10761414	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761415	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761417	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821594	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10821597	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821600	0.99[ASN][1000 genomes]
rs10821601	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821603	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10994008	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10994024	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11540401	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12572724	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12778666	0.83[ASN][1000 genomes]
rs1877793	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1877796	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1913512	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913513	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1913514	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1955321	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090121	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2393572	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793880	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4387309	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948242	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948243	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948364	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4948365	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948366	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58643066	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7069589	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7075215	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079829	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099368	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721991	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs721992	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894842	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7909766	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9971121	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61548200-61556200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:61548600-61573000	Strong transcription	Dnd41	blood
8	chr10:61548800-61555400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:61549600-61558400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:61549600-61572000	Strong transcription	Liver	Liver
11	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
12	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
13	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
14	chr10:61550000-61555400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:61550200-61558200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:61550200-61559600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:61550400-61555400	Strong transcription	Fetal Thymus	thymus
19	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
20	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:61551400-61561800	Strong transcription	Primary hematopoietic stem cells	blood
24	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:61552600-61557000	Weak transcription	Fetal Kidney	kidney
26	chr10:61552800-61556200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:61553000-61559400	Weak transcription	Psoas Muscle	Psoas
28	chr10:61553000-61562800	Weak transcription	Gastric	stomach
29	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
31	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:61553200-61557400	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:61553400-61556400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:61553400-61557400	Weak transcription	Esophagus	oesophagus
39	chr10:61553400-61562800	Weak transcription	Lung	lung
40	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
42	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
43	chr10:61553600-61555400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr10:61553800-61556400	Weak transcription	Fetal Intestine Small	intestine
45	chr10:61553800-61559000	Weak transcription	Fetal Stomach	stomach
46	chr10:61554000-61556200	Weak transcription	Placenta	Placenta
47	chr10:61554200-61561200	Weak transcription	HepG2	liver
48	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
49	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
50	chr10:61554400-61556200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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