Variant report

Variant	rs1955321
Chromosome Location	chr10:61563730-61563731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61468721..61471091-chr10:61563616..61565222,2	K562	blood:
2	chr10:61385930..61387732-chr10:61562778..61564958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165449	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1053266	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10761414	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761415	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761417	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821594	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10821596	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821597	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10821600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10821601	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821603	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994008	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10994024	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11540401	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12259529	0.82[CEU][hapmap]
rs12262735	0.83[CEU][hapmap]
rs12572724	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12778666	0.83[ASN][1000 genomes]
rs1877793	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1877796	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1913512	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1913513	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1913514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2090121	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2393572	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793880	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4387309	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948242	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948243	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948244	0.82[CEU][hapmap]
rs4948364	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948365	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4948366	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58643066	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7069589	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7075215	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7079829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099368	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721991	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs721992	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7894842	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909766	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9971121	0.91[CEU][hapmap];0.96[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61548600-61573000	Strong transcription	Dnd41	blood
3	chr10:61549600-61572000	Strong transcription	Liver	Liver
4	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
6	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
8	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:61554600-61564200	Weak transcription	Fetal Brain Female	brain
15	chr10:61554800-61569000	Weak transcription	Stomach Mucosa	stomach
16	chr10:61554800-61571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:61556000-61568400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:61556200-61568800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:61556200-61569000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:61556800-61570400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
28	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
29	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:61558000-61564000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:61559400-61569000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:61561000-61567000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:61561000-61568200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr10:61561000-61569000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:61561000-61572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr10:61561200-61564400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr10:61561200-61571800	Strong transcription	HSMM	muscle
40	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:61561200-61574600	Strong transcription	HepG2	liver
42	chr10:61561600-61567000	Strong transcription	NHDF-Ad	bronchial
43	chr10:61561600-61568400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:61561600-61572600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:61561600-61572800	Strong transcription	Osteobl	bone
46	chr10:61561600-61573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:61561800-61571600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:61562000-61573400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:61562200-61564800	Strong transcription	A549	lung
50	chr10:61562200-61566600	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links