Variant report
| Variant | rs11540401 |
|---|---|
| Chromosome Location | chr10:61549818-61549819 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61537600-61582800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr10:61540000-61551600 | Weak transcription | Fetal Lung | lung |
| 3 | chr10:61540200-61550200 | Weak transcription | Fetal Muscle Trunk | muscle |
| 4 | chr10:61540200-61550400 | Weak transcription | NH-A | brain |
| 5 | chr10:61540200-61551600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 6 | chr10:61540200-61551600 | Weak transcription | Brain Anterior Caudate | brain |
| 7 | chr10:61540200-61551600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 8 | chr10:61540200-61551800 | Weak transcription | Brain Germinal Matrix | brain |
| 9 | chr10:61540200-61551800 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 10 | chr10:61540200-61552200 | Weak transcription | Fetal Stomach | stomach |
| 11 | chr10:61540200-61562800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 12 | chr10:61540800-61551600 | Weak transcription | HSMM | muscle |
| 13 | chr10:61541000-61550400 | Weak transcription | Fetal Muscle Leg | muscle |
| 14 | chr10:61541400-61551400 | Weak transcription | Hela-S3 | cervix |
| 15 | chr10:61541400-61551400 | Weak transcription | HSMMtube | muscle |
| 16 | chr10:61544200-61551400 | Weak transcription | Brain Hippocampus Middle | brain |
| 17 | chr10:61544400-61550400 | Weak transcription | Primary T cells from cord blood | blood |
| 18 | chr10:61544600-61550400 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 19 | chr10:61544800-61550200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 20 | chr10:61545000-61552400 | Weak transcription | Colonic Mucosa | Colon |
| 21 | chr10:61545200-61563200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 22 | chr10:61545600-61551800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 23 | chr10:61545800-61563200 | Weak transcription | Spleen | Spleen |
| 24 | chr10:61546200-61550000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 25 | chr10:61546200-61551400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 26 | chr10:61546200-61551400 | Weak transcription | A549 | lung |
| 27 | chr10:61546200-61552400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 28 | chr10:61546200-61553800 | Weak transcription | Stomach Mucosa | stomach |
| 29 | chr10:61546400-61550200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 30 | chr10:61546600-61552400 | Weak transcription | Pancreas | Pancrea |
| 31 | chr10:61546800-61550000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 32 | chr10:61546800-61550200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 33 | chr10:61546800-61550400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 34 | chr10:61546800-61550400 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
| 35 | chr10:61546800-61550400 | Weak transcription | Fetal Thymus | thymus |
| 36 | chr10:61546800-61551000 | Weak transcription | HMEC | breast |
| 37 | chr10:61546800-61552000 | Weak transcription | Fetal Brain Female | brain |
| 38 | chr10:61546800-61552200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 39 | chr10:61547000-61550200 | Weak transcription | Primary T cells fromperipheralblood | blood |
| 40 | chr10:61547000-61552000 | Weak transcription | HUVEC | blood vessel |
| 41 | chr10:61547200-61550400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 42 | chr10:61547200-61551800 | Weak transcription | Left Ventricle | heart |
| 43 | chr10:61547200-61552400 | Weak transcription | Aorta | Aorta |
| 44 | chr10:61547200-61552400 | Weak transcription | Gastric | stomach |
| 45 | chr10:61547200-61554800 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 46 | chr10:61547400-61550200 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 47 | chr10:61547400-61551400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 48 | chr10:61547400-61551800 | Weak transcription | Esophagus | oesophagus |
| 49 | chr10:61547400-61552400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 50 | chr10:61547600-61550000 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
