Variant report

Variant	rs7099368
Chromosome Location	chr10:61566323-61566324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:61565994-61566419	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CCDC6	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10458645	0.89[GIH][hapmap]
rs10509112	0.81[GIH][hapmap]
rs1053266	0.86[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10761414	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761417	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821594	0.82[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10821596	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821597	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10821600	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10821601	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821603	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994008	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994024	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540401	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12572724	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12778666	0.81[ASN][1000 genomes]
rs1871638	0.80[GIH][hapmap]
rs1877793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1877796	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1913512	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1913513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1913514	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1955321	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090121	0.80[EUR][1000 genomes]
rs2393572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793880	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3844161	0.84[GIH][hapmap]
rs4387309	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4948242	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948243	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948364	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948365	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4948366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58643066	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7069589	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7075215	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079829	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088886	0.87[GIH][hapmap]
rs721991	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs721992	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7894842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61548600-61573000	Strong transcription	Dnd41	blood
3	chr10:61549600-61572000	Strong transcription	Liver	Liver
4	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
6	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
8	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:61554800-61569000	Weak transcription	Stomach Mucosa	stomach
12	chr10:61554800-61571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:61556000-61568400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:61556200-61568800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:61556200-61569000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:61556800-61570400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
24	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
25	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:61559400-61569000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:61561000-61567000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:61561000-61568200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:61561000-61569000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:61561000-61572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr10:61561200-61571800	Strong transcription	HSMM	muscle
34	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:61561200-61574600	Strong transcription	HepG2	liver
36	chr10:61561600-61567000	Strong transcription	NHDF-Ad	bronchial
37	chr10:61561600-61568400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:61561600-61572600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:61561600-61572800	Strong transcription	Osteobl	bone
40	chr10:61561600-61573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:61561800-61571600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:61562000-61573400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:61562200-61566600	Strong transcription	Brain Hippocampus Middle	brain
44	chr10:61562200-61568000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:61562200-61574600	Strong transcription	Fetal Thymus	thymus
46	chr10:61562400-61572600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:61562600-61569200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:61562600-61571600	Strong transcription	GM12878-XiMat	blood
49	chr10:61562600-61573000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:61562600-61573400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links