Variant report

Variant	rs12572724
Chromosome Location	chr10:61548162-61548163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509112	0.92[ASN][1000 genomes]
rs10761414	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761415	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10761417	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821596	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821601	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821603	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10994008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994024	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12259529	0.94[ASN][1000 genomes]
rs12261561	0.95[ASN][1000 genomes]
rs12262735	0.93[ASN][1000 genomes]
rs1877793	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877796	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1913512	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913513	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1913514	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1955321	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2090121	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393572	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3793880	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4387309	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948242	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948243	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4948244	0.93[ASN][1000 genomes]
rs4948364	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948365	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948366	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56330865	0.95[ASN][1000 genomes]
rs58643066	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7069589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075215	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7079829	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7099368	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs721991	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721992	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894842	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7909766	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9971121	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:61540200-61550400	Weak transcription	NH-A	brain
7	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
13	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
15	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:61540800-61551600	Weak transcription	HSMM	muscle
17	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
19	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
20	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
21	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:61544400-61549600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
24	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
27	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:61545600-61549600	Weak transcription	Primary B cells from cord blood	blood
29	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
31	chr10:61546000-61548200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:61546000-61548800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:61546000-61548800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:61546200-61548800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:61546200-61549600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:61546200-61549600	Weak transcription	Fetal Intestine Large	intestine
37	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:61546200-61551400	Weak transcription	A549	lung
40	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
42	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:61546600-61548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:61546600-61548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:61546600-61548200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:61546600-61548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:61546600-61548800	Weak transcription	Lung	lung
48	chr10:61546600-61552400	Weak transcription	Pancreas	Pancrea
49	chr10:61546800-61548400	Enhancers	Ovary	ovary
50	chr10:61546800-61548600	Weak transcription	Dnd41	blood

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