Variant report

Variant	rs10821603
Chromosome Location	chr10:61573604-61573605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:61573293-61573765	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CCDC6	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1053266	0.93[ASN][1000 genomes]
rs10761414	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761415	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821594	0.93[ASN][1000 genomes]
rs10821596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821597	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821600	0.96[ASN][1000 genomes]
rs10821601	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10994008	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10994024	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540401	0.84[ASN][1000 genomes]
rs12572724	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12778666	0.81[ASN][1000 genomes]
rs1877793	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1877796	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1913512	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1913513	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1913514	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1955321	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090121	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2393572	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4387309	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4948242	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948243	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948364	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948365	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948366	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58643066	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069589	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7075215	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079829	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099368	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721991	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs721992	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7894842	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909766	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971121	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975776	chr10:61569234-61574091	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
9	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:61561200-61574600	Strong transcription	HepG2	liver
14	chr10:61562200-61574600	Strong transcription	Fetal Thymus	thymus
15	chr10:61562800-61574200	Strong transcription	Placenta	Placenta
16	chr10:61562800-61574400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:61563600-61577600	Weak transcription	Right Atrium	heart
18	chr10:61564200-61576800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
21	chr10:61567600-61579200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:61568200-61582400	Weak transcription	Psoas Muscle	Psoas
23	chr10:61569000-61574600	Strong transcription	Primary hematopoietic stem cells	blood
24	chr10:61569200-61574600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:61569400-61574000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:61569400-61574400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:61569400-61575000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr10:61569600-61574200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:61569600-61574400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:61569600-61574600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:61569800-61574800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:61570000-61574400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:61570000-61575000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:61570200-61574800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:61571000-61576800	Weak transcription	Fetal Intestine Small	intestine
36	chr10:61571000-61591200	Weak transcription	NHEK	skin
37	chr10:61571200-61577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:61571400-61579000	Weak transcription	Brain Germinal Matrix	brain
39	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
40	chr10:61571600-61574000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:61571600-61574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:61571600-61574200	Weak transcription	Stomach Mucosa	stomach
43	chr10:61571600-61574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:61571600-61576200	Weak transcription	Fetal Heart	heart
45	chr10:61571600-61576800	Weak transcription	Esophagus	oesophagus
46	chr10:61571600-61576800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:61571600-61577000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:61571600-61577200	Weak transcription	HSMMtube	muscle
49	chr10:61571600-61577400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:61571600-61577400	Weak transcription	Brain Angular Gyrus	brain

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