Variant report

Variant	rs1913513
Chromosome Location	chr10:61542343-61542344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509112	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10761414	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10761415	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761417	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821596	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10821601	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821603	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10994008	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994024	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12259529	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12261561	0.90[ASN][1000 genomes]
rs12262735	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12572724	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1877793	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877796	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1913512	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913514	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1955321	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2090121	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2393572	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3793880	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4387309	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948242	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4948243	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948244	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4948364	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948365	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948366	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56330865	0.90[ASN][1000 genomes]
rs58643066	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7069589	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075215	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7079829	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7099368	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs721991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721992	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894842	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7909766	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9971121	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438914	chr10:61542246-61547444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61546800	Weak transcription	Ovary	ovary
5	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:61540200-61550400	Weak transcription	NH-A	brain
8	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
14	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
16	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:61540800-61551600	Weak transcription	HSMM	muscle
18	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
20	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
21	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain

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