Variant report

Variant	rs1877793
Chromosome Location	chr10:61546674-61546675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10458645	0.87[CHD][hapmap];0.81[GIH][hapmap]
rs10509112	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs1053266	0.85[GIH][hapmap]
rs10761414	0.85[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761415	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761417	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821594	0.83[GIH][hapmap]
rs10821596	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821601	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821603	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10994008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994024	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12243564	0.86[CHD][hapmap]
rs12259529	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12261561	0.92[ASN][1000 genomes]
rs12262735	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12572724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1664284	0.84[CHD][hapmap]
rs1664285	0.83[CHB][hapmap]
rs1871638	0.87[CHD][hapmap]
rs1877796	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913512	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913513	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913514	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1955321	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2090121	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2393572	0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2458661	0.87[CHD][hapmap]
rs2458663	0.82[CHD][hapmap]
rs3793880	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3844161	0.89[CHD][hapmap];0.80[GIH][hapmap]
rs3851247	0.87[CHD][hapmap]
rs3999570	0.87[CHD][hapmap]
rs4387309	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948242	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948243	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4948244	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes]
rs4948364	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948365	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948366	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948372	0.87[CHD][hapmap]
rs4948374	0.87[CHD][hapmap]
rs4948375	0.80[CHB][hapmap]
rs56330865	0.92[ASN][1000 genomes]
rs58643066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7069589	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7075215	0.89[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7079228	0.87[CHD][hapmap]
rs7079829	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7088886	0.87[CHD][hapmap]
rs7099368	0.96[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs721991	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721992	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7894842	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7909766	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7920403	0.87[CHD][hapmap]
rs9663498	0.85[CHD][hapmap]
rs9971121	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438914	chr10:61542246-61547444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61546800	Weak transcription	Ovary	ovary
5	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:61540200-61550400	Weak transcription	NH-A	brain
8	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
14	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
16	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:61540800-61551600	Weak transcription	HSMM	muscle
18	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
20	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
21	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:61544000-61547400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:61544400-61549600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
29	chr10:61545200-61548000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:61545600-61547200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:61545600-61549600	Weak transcription	Primary B cells from cord blood	blood
33	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
35	chr10:61546000-61548200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:61546000-61548800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:61546000-61548800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:61546200-61547800	Weak transcription	Fetal Intestine Small	intestine
39	chr10:61546200-61548800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:61546200-61549600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:61546200-61549600	Weak transcription	Fetal Intestine Large	intestine
42	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:61546200-61551400	Weak transcription	A549	lung
45	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
47	chr10:61546400-61547800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:61546600-61548000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:61546600-61548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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