Variant report

Variant	rs7079829
Chromosome Location	chr10:61561977-61561978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1053266	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10761414	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761415	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761417	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821594	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10821596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821597	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10821601	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821603	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994008	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10994024	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11540401	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12259529	0.82[CEU][hapmap]
rs12262735	0.83[CEU][hapmap]
rs12572724	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12778666	0.84[ASN][1000 genomes]
rs1877793	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1877796	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1913512	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1913513	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1913514	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1955321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2090121	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2393572	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793880	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4387309	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4948242	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948243	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948244	0.82[CEU][hapmap]
rs4948364	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948365	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4948366	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58643066	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069589	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7075215	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099368	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs721991	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs721992	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7894842	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909766	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9971121	0.91[CEU][hapmap];0.96[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:61548600-61573000	Strong transcription	Dnd41	blood
7	chr10:61549600-61572000	Strong transcription	Liver	Liver
8	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
9	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
10	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
12	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:61553000-61562800	Weak transcription	Gastric	stomach
17	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
19	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:61553400-61562800	Weak transcription	Lung	lung
25	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
27	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
28	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
29	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
30	chr10:61554400-61562200	Weak transcription	A549	lung
31	chr10:61554400-61562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:61554400-61562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:61554400-61562800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:61554400-61562800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:61554400-61562800	Weak transcription	Aorta	Aorta
36	chr10:61554400-61562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:61554400-61562800	Weak transcription	Small Intestine	intestine
38	chr10:61554400-61563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:61554400-61563200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:61554400-61563200	Weak transcription	NHLF	lung
41	chr10:61554400-61563400	Weak transcription	Brain Substantia Nigra	brain
42	chr10:61554600-61562600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:61554600-61562800	Weak transcription	HMEC	breast
44	chr10:61554600-61562800	Weak transcription	HSMMtube	muscle
45	chr10:61554600-61564200	Weak transcription	Fetal Brain Female	brain
46	chr10:61554800-61562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:61554800-61563200	Weak transcription	Brain Angular Gyrus	brain
48	chr10:61554800-61569000	Weak transcription	Stomach Mucosa	stomach
49	chr10:61554800-61571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:61555000-61562800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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