Variant report

Variant	rs4948243
Chromosome Location	chr10:61570450-61570451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61568113..61570689-chr10:61665672..61667670,4	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1053266	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10761414	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761415	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761417	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821594	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10821596	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821597	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10821600	0.95[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs10821601	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821603	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994008	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10994024	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540401	0.96[JPT][hapmap];0.84[ASN][1000 genomes]
rs12259529	0.82[CEU][hapmap]
rs12262735	0.82[CEU][hapmap]
rs12572724	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12778666	0.81[ASN][1000 genomes]
rs1877793	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1877796	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1913512	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1913513	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1913514	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1955321	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090121	0.82[EUR][1000 genomes]
rs2393572	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793880	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4387309	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948242	0.92[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948244	0.81[CEU][hapmap]
rs4948364	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948365	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4948366	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58643066	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7069589	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7075215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079829	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099368	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721991	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs721992	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7894842	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909766	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971121	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975776	chr10:61569234-61574091	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61548600-61573000	Strong transcription	Dnd41	blood
3	chr10:61549600-61572000	Strong transcription	Liver	Liver
4	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:61554800-61571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
14	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
15	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:61561000-61572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr10:61561200-61571800	Strong transcription	HSMM	muscle
20	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:61561200-61574600	Strong transcription	HepG2	liver
22	chr10:61561600-61572600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:61561600-61572800	Strong transcription	Osteobl	bone
24	chr10:61561600-61573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:61561800-61571600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:61562000-61573400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:61562200-61574600	Strong transcription	Fetal Thymus	thymus
28	chr10:61562400-61572600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:61562600-61571600	Strong transcription	GM12878-XiMat	blood
30	chr10:61562600-61573000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:61562600-61573400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:61562800-61571600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:61562800-61571600	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr10:61562800-61571600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61562800-61571600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:61562800-61571600	Strong transcription	Thymus	Thymus
37	chr10:61562800-61572400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:61562800-61572600	Strong transcription	Fetal Intestine Large	intestine
39	chr10:61562800-61572600	Strong transcription	HMEC	breast
40	chr10:61562800-61572800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:61562800-61574200	Strong transcription	Placenta	Placenta
42	chr10:61562800-61574400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:61563000-61571000	Strong transcription	Fetal Intestine Small	intestine
44	chr10:61563000-61572800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr10:61563200-61571600	Strong transcription	Fetal Muscle Leg	muscle
46	chr10:61563400-61571000	Strong transcription	NHEK	skin
47	chr10:61563600-61577600	Weak transcription	Right Atrium	heart
48	chr10:61564200-61576800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:61564800-61570600	Weak transcription	HUVEC	blood vessel
50	chr10:61565000-61571000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links