Variant report

Variant	rs10821594
Chromosome Location	chr10:61551428-61551429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1053266	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761414	0.86[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs10761415	0.84[ASW][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10761417	0.92[ASN][1000 genomes]
rs10821596	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10821597	0.91[ASN][1000 genomes]
rs10821600	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10821601	0.95[ASN][1000 genomes]
rs10821603	0.93[ASN][1000 genomes]
rs10994024	0.93[ASN][1000 genomes]
rs11540401	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12778666	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1913512	0.82[AMR][1000 genomes]
rs1955321	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2393572	0.82[ASW][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3793880	0.93[ASN][1000 genomes]
rs4948242	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4948243	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4948364	0.82[AMR][1000 genomes]
rs4948366	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7075215	0.82[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs7079829	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7099368	0.82[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7894842	0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs7909766	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9971121	0.82[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
3	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
9	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:61540800-61551600	Weak transcription	HSMM	muscle
11	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
12	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
15	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
17	chr10:61546600-61552400	Weak transcription	Pancreas	Pancrea
18	chr10:61546800-61552000	Weak transcription	Fetal Brain Female	brain
19	chr10:61546800-61552200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:61547000-61552000	Weak transcription	HUVEC	blood vessel
21	chr10:61547200-61551800	Weak transcription	Left Ventricle	heart
22	chr10:61547200-61552400	Weak transcription	Aorta	Aorta
23	chr10:61547200-61552400	Weak transcription	Gastric	stomach
24	chr10:61547200-61554800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:61547400-61551800	Weak transcription	Esophagus	oesophagus
26	chr10:61547400-61552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:61547600-61551600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:61547600-61551800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:61547800-61555000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:61548200-61551600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:61548200-61556200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr10:61548400-61552600	Weak transcription	Ovary	ovary
34	chr10:61548600-61551800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:61548600-61551800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:61548600-61552400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:61548600-61552400	Weak transcription	Small Intestine	intestine
38	chr10:61548600-61552600	Weak transcription	Fetal Intestine Small	intestine
39	chr10:61548600-61573000	Strong transcription	Dnd41	blood
40	chr10:61548800-61552200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:61548800-61552600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:61548800-61555400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:61549000-61551800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:61549000-61555200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:61549200-61551600	Weak transcription	Brain Angular Gyrus	brain
46	chr10:61549200-61551800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:61549200-61552200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:61549200-61552400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:61549200-61552400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:61549200-61552400	Weak transcription	Lung	lung

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