Variant report

Variant	rs1877796
Chromosome Location	chr10:61538643-61538644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10458645	0.85[CHD][hapmap]
rs10509112	0.89[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10761414	0.95[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761415	0.89[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10761417	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821596	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821601	0.83[EUR][1000 genomes]
rs10821603	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994008	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994024	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12243564	0.84[CHD][hapmap]
rs12259529	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12261561	0.89[ASN][1000 genomes]
rs12262735	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12572724	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1664284	0.82[CHD][hapmap]
rs1871638	0.84[CHD][hapmap]
rs1877793	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913512	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913513	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1913514	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1955321	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2090121	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393572	0.89[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2458661	0.85[CHD][hapmap]
rs3793880	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3844161	0.87[CHD][hapmap]
rs3851247	0.84[CHD][hapmap]
rs3999570	0.84[CHD][hapmap]
rs4387309	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948242	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4948243	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4948244	0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4948364	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948365	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4948366	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4948372	0.84[CHD][hapmap]
rs4948374	0.84[CHD][hapmap]
rs56330865	0.89[ASN][1000 genomes]
rs58643066	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069589	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075215	0.82[CEU][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7079228	0.84[CHD][hapmap]
rs7079829	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7088886	0.85[CHD][hapmap]
rs7099368	0.89[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs721991	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs721992	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7894842	0.89[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7909766	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7920403	0.84[CHD][hapmap]
rs9663498	0.82[CHD][hapmap]
rs9971121	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61535800-61538800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:61537800-61539400	Weak transcription	Brain Germinal Matrix	brain
4	chr10:61538600-61541400	Enhancers	HSMMtube	muscle

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