Variant report

Variant	rs10821604
Chromosome Location	chr10:61580265-61580266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61572320..61576076-chr10:61578155..61580809,3	K562	blood:
2	chr10:61580220..61581804-chr10:61665581..61667591,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10458645	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761415	0.84[YRI][hapmap]
rs10821605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994021	0.80[JPT][hapmap]
rs10994026	0.86[JPT][hapmap]
rs10994027	0.86[JPT][hapmap]
rs10994030	0.85[JPT][hapmap]
rs10994031	0.86[JPT][hapmap]
rs10994051	0.82[EUR][1000 genomes]
rs1149660	0.81[JPT][hapmap]
rs12243564	0.85[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1621496	0.86[JPT][hapmap]
rs1664256	0.85[JPT][hapmap]
rs1664284	0.90[JPT][hapmap]
rs1664285	0.90[JPT][hapmap]
rs1684901	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs16914233	0.86[JPT][hapmap]
rs1709342	0.81[JPT][hapmap]
rs1709343	0.82[JPT][hapmap]
rs1709345	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1871637	0.96[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1871638	0.96[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2120989	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2120990	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271562	0.84[JPT][hapmap]
rs2440926	0.82[JPT][hapmap]
rs2458661	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2458663	0.90[JPT][hapmap]
rs3793878	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3844161	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851247	0.84[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3851248	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3862860	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3862861	0.81[ASN][1000 genomes]
rs3999569	0.85[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3999570	0.85[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948366	0.85[YRI][hapmap]
rs4948372	0.85[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948373	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948374	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948375	0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61848702	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479653	0.85[JPT][hapmap]
rs6479654	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479659	0.81[ASN][1000 genomes]
rs6479660	0.80[ASN][1000 genomes]
rs6479661	0.85[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479662	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068104	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7068247	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7070800	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7074685	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7078533	0.83[JPT][hapmap]
rs7079228	0.85[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7079588	0.85[JPT][hapmap]
rs7088755	0.86[JPT][hapmap]
rs7088808	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088886	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092259	0.86[JPT][hapmap]
rs7908517	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910256	0.85[JPT][hapmap]
rs7920049	0.86[JPT][hapmap]
rs7920403	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9663498	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9664183	0.95[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
5	chr10:61568200-61582400	Weak transcription	Psoas Muscle	Psoas
6	chr10:61571000-61591200	Weak transcription	NHEK	skin
7	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
8	chr10:61571600-61580600	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:61571600-61580800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:61571600-61582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:61571600-61583600	Weak transcription	GM12878-XiMat	blood
12	chr10:61571600-61585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:61571600-61585800	Weak transcription	Lung	lung
15	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
18	chr10:61571600-61609200	Weak transcription	NHLF	lung
19	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
20	chr10:61571800-61583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
22	chr10:61572200-61585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:61572400-61589200	Weak transcription	K562	blood
24	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
25	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:61572600-61583600	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:61572600-61584200	Weak transcription	Fetal Lung	lung
28	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:61573200-61582000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:61573400-61585600	Weak transcription	Adipose Nuclei	Adipose
33	chr10:61573600-61581400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:61574200-61586200	Weak transcription	Placenta	Placenta
35	chr10:61574200-61589000	Weak transcription	Liver	Liver
36	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:61574600-61588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:61574600-61589000	Weak transcription	HMEC	breast
39	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
40	chr10:61574800-61587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:61575000-61584000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:61575800-61582000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:61576000-61586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
46	chr10:61578000-61582400	Weak transcription	Pancreas	Pancrea
47	chr10:61578000-61582800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:61578000-61585000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr10:61578000-61585800	Weak transcription	Gastric	stomach
50	chr10:61578000-61586400	Weak transcription	Primary T cells fromperipheralblood	blood

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