Variant report

Variant	rs10994026
Chromosome Location	chr10:61577396-61577397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61576666..61579200-chr10:61664760..61666510,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10458645	0.85[JPT][hapmap]
rs10821604	0.86[JPT][hapmap]
rs10821607	0.86[JPT][hapmap]
rs10994021	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994022	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149661	0.94[ASN][1000 genomes]
rs1149662	0.94[ASN][1000 genomes]
rs1149663	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11815103	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12244844	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252428	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12261734	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1621496	0.80[JPT][hapmap]
rs1664284	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs1664285	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs1684929	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16914097	0.93[EUR][1000 genomes]
rs16914233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1709342	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1709343	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1709344	0.93[ASN][1000 genomes]
rs1871637	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1871638	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2120989	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2120990	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2271562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2440926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2458663	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs2458664	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3106569	0.81[ASN][1000 genomes]
rs3793878	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3793882	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3844161	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3851247	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3851248	0.81[ASN][1000 genomes]
rs3851249	0.87[CEU][hapmap]
rs3862861	0.81[ASN][1000 genomes]
rs3999569	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3999570	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4948372	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4948373	0.81[ASN][1000 genomes]
rs4948374	0.85[JPT][hapmap]
rs4948375	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs55706286	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55842846	0.80[ASN][1000 genomes]
rs55958518	0.80[ASN][1000 genomes]
rs56692362	0.80[ASN][1000 genomes]
rs57032269	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57348988	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61848702	0.80[ASN][1000 genomes]
rs6479653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479654	0.86[JPT][hapmap]
rs6479658	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479659	0.80[ASN][1000 genomes]
rs6479660	0.81[ASN][1000 genomes]
rs6479661	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6479662	0.81[ASN][1000 genomes]
rs68045193	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7068104	0.80[ASN][1000 genomes]
rs7068247	0.81[ASN][1000 genomes]
rs7074685	0.81[ASN][1000 genomes]
rs7078533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7079228	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7079588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7080447	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7088755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088808	0.82[ASN][1000 genomes]
rs7088886	0.85[JPT][hapmap]
rs7092259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72809579	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72817923	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908517	0.86[JPT][hapmap]
rs7910256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916673	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7917071	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7920049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7920403	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs9663498	0.81[JPT][hapmap]
rs9664183	0.91[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:61563600-61577600	Weak transcription	Right Atrium	heart
5	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
7	chr10:61567600-61579200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:61568200-61582400	Weak transcription	Psoas Muscle	Psoas
9	chr10:61571000-61591200	Weak transcription	NHEK	skin
10	chr10:61571200-61577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:61571400-61579000	Weak transcription	Brain Germinal Matrix	brain
12	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
13	chr10:61571600-61577400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:61571600-61577400	Weak transcription	Brain Angular Gyrus	brain
15	chr10:61571600-61577400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:61571600-61577400	Weak transcription	Right Ventricle	heart
17	chr10:61571600-61577600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:61571600-61577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:61571600-61577600	Weak transcription	Gastric	stomach
20	chr10:61571600-61577600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:61571600-61577800	Weak transcription	Aorta	Aorta
22	chr10:61571600-61577800	Weak transcription	Thymus	Thymus
23	chr10:61571600-61579200	Weak transcription	Fetal Brain Male	brain
24	chr10:61571600-61579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:61571600-61579400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:61571600-61579800	Weak transcription	Brain Substantia Nigra	brain
27	chr10:61571600-61580600	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:61571600-61580800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:61571600-61582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:61571600-61583600	Weak transcription	GM12878-XiMat	blood
31	chr10:61571600-61585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:61571600-61585800	Weak transcription	Lung	lung
34	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
37	chr10:61571600-61609200	Weak transcription	NHLF	lung
38	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
39	chr10:61571800-61577400	Weak transcription	HSMM	muscle
40	chr10:61571800-61583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:61572000-61577600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:61572000-61577600	Weak transcription	NHDF-Ad	bronchial
43	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
44	chr10:61572200-61585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:61572400-61579200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:61572400-61579400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:61572400-61589200	Weak transcription	K562	blood
48	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
49	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:61572600-61577600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links