Variant report

Variant	rs10994022
Chromosome Location	chr10:61560591-61560592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61556023..61558278-chr10:61560219..61561760,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10821593	0.86[ASN][1000 genomes]
rs10994004	0.86[ASN][1000 genomes]
rs10994005	0.86[ASN][1000 genomes]
rs10994021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994026	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994030	0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1149663	0.89[EUR][1000 genomes]
rs11815103	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11817729	0.93[ASN][1000 genomes]
rs12242758	0.89[ASN][1000 genomes]
rs12243559	0.85[ASN][1000 genomes]
rs12244844	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12252428	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12261734	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12267686	0.90[ASN][1000 genomes]
rs1664284	0.82[JPT][hapmap]
rs1664285	0.83[JPT][hapmap]
rs1684929	0.89[EUR][1000 genomes]
rs16914097	0.96[EUR][1000 genomes]
rs16914233	0.93[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1709342	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1709343	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs1709345	0.81[JPT][hapmap]
rs1871637	0.82[JPT][hapmap]
rs1871638	0.82[JPT][hapmap]
rs1949257	0.86[ASN][1000 genomes]
rs2120989	0.83[JPT][hapmap]
rs2120990	0.83[JPT][hapmap]
rs2271562	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs2440926	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes]
rs2458663	0.82[JPT][hapmap]
rs2458664	0.89[EUR][1000 genomes]
rs3793878	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3793882	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3844161	0.82[JPT][hapmap]
rs3851247	0.82[JPT][hapmap]
rs3851249	0.85[CEU][hapmap]
rs3999569	0.83[JPT][hapmap]
rs3999570	0.82[JPT][hapmap]
rs4948372	0.82[JPT][hapmap]
rs4948375	0.89[JPT][hapmap]
rs55706286	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55958518	0.96[ASN][1000 genomes]
rs56692362	0.96[ASN][1000 genomes]
rs57032269	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57348988	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479653	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479658	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479661	0.83[JPT][hapmap]
rs68045193	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078533	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs7079228	0.82[JPT][hapmap]
rs7079588	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs7080447	0.89[EUR][1000 genomes]
rs7088755	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7092259	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72809579	0.85[EUR][1000 genomes]
rs72817923	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7901952	0.81[ASN][1000 genomes]
rs7910256	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7916673	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917071	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7920049	0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7920403	0.82[JPT][hapmap]
rs882896	0.86[ASN][1000 genomes]
rs9664183	0.83[JPT][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:61548600-61573000	Strong transcription	Dnd41	blood
7	chr10:61549600-61572000	Strong transcription	Liver	Liver
8	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
9	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
10	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
13	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:61551400-61561800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:61553000-61562800	Weak transcription	Gastric	stomach
19	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
21	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:61553400-61562800	Weak transcription	Lung	lung
27	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
29	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
30	chr10:61554200-61561200	Weak transcription	HepG2	liver
31	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
32	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
33	chr10:61554400-61561000	Weak transcription	Fetal Lung	lung
34	chr10:61554400-61561000	Weak transcription	Ovary	ovary
35	chr10:61554400-61562200	Weak transcription	A549	lung
36	chr10:61554400-61562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:61554400-61562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:61554400-61562800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:61554400-61562800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:61554400-61562800	Weak transcription	Aorta	Aorta
41	chr10:61554400-61562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:61554400-61562800	Weak transcription	Small Intestine	intestine
43	chr10:61554400-61563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:61554400-61563200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:61554400-61563200	Weak transcription	NHLF	lung
46	chr10:61554400-61563400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:61554600-61562600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:61554600-61562800	Weak transcription	HMEC	breast
49	chr10:61554600-61562800	Weak transcription	HSMMtube	muscle
50	chr10:61554600-61564200	Weak transcription	Fetal Brain Female	brain

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