Variant report

Variant	rs3793878
Chromosome Location	chr10:61595039-61595040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61594916..61595768-chr10:61791050..61791997,4	MCF-7	breast:
2	chr10:61594823..61595369-chr20:52765425..52766238,2	MCF-7	breast:
3	chr10:61593326..61595203-chr10:61629041..61631124,2	K562	blood:
4	chr10:61594854..61595768-chr10:61791050..61791997,6	MCF-7	breast:
5	chr10:61594610..61596651-chr10:61661878..61664205,2	K562	blood:
6	chr10:61593876..61596694-chr10:61598582..61600654,2	K562	blood:
7	chr10:61594890..61595766-chr10:61639203..61639741,2	MCF-7	breast:
8	chr10:61593800..61596584-chr10:61665153..61667297,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10458645	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10821604	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10821605	0.83[ASN][1000 genomes]
rs10821606	0.83[ASN][1000 genomes]
rs10821607	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10994021	1.00[CEU][hapmap];0.86[CHD][hapmap];0.91[MEX][hapmap];0.88[EUR][1000 genomes]
rs10994022	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10994026	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10994030	0.94[ASW][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1149661	0.81[ASN][1000 genomes]
rs1149662	0.81[ASN][1000 genomes]
rs1149663	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11815103	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12244844	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12252428	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12261734	0.88[EUR][1000 genomes]
rs1684929	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16914097	0.85[EUR][1000 genomes]
rs16914233	0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1709342	0.91[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs1709343	0.90[JPT][hapmap]
rs1709345	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1871637	0.84[JPT][hapmap]
rs1871638	0.85[JPT][hapmap]
rs2120989	0.85[JPT][hapmap]
rs2120990	0.85[JPT][hapmap]
rs2271562	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2440926	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2458661	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2458664	0.89[EUR][1000 genomes]
rs3793882	0.88[EUR][1000 genomes]
rs3844161	0.85[JPT][hapmap]
rs3851247	0.85[JPT][hapmap]
rs3851249	0.87[CEU][hapmap]
rs3999569	0.84[JPT][hapmap]
rs3999570	0.85[JPT][hapmap]
rs4948372	0.85[JPT][hapmap]
rs4948374	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4948375	0.83[JPT][hapmap]
rs55706286	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57032269	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57348988	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479653	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479654	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6479658	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479661	0.85[JPT][hapmap]
rs68045193	0.88[EUR][1000 genomes]
rs7078533	0.94[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7079228	0.85[JPT][hapmap]
rs7079588	0.89[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7080447	0.89[EUR][1000 genomes]
rs7088755	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7088886	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7092259	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72809579	0.85[EUR][1000 genomes]
rs72817923	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7908517	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7910256	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7916673	0.88[EUR][1000 genomes]
rs7917071	0.88[EUR][1000 genomes]
rs7920049	0.95[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7920403	0.85[JPT][hapmap]
rs9663498	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9664183	0.85[JPT][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
4	chr10:61571600-61609200	Weak transcription	NHLF	lung
5	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
6	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
7	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
12	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:61579800-61595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:61580000-61595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
20	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:61583200-61595400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
24	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:61586200-61597800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:61586400-61606600	Weak transcription	Gastric	stomach
30	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:61587000-61612000	Weak transcription	Ovary	ovary
32	chr10:61589000-61598000	Weak transcription	Right Atrium	heart
33	chr10:61589200-61599000	Weak transcription	NHDF-Ad	bronchial
34	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:61591400-61598800	Weak transcription	Osteobl	bone
36	chr10:61591600-61609400	Weak transcription	Brain Germinal Matrix	brain
37	chr10:61591800-61597000	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:61591800-61597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:61591800-61598000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:61591800-61598400	Weak transcription	Placenta	Placenta
41	chr10:61591800-61598400	Weak transcription	HSMM	muscle
42	chr10:61591800-61599000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:61591800-61600800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:61591800-61601400	Weak transcription	Fetal Stomach	stomach
45	chr10:61591800-61603200	Weak transcription	Hela-S3	cervix
46	chr10:61591800-61607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:61591800-61607600	Weak transcription	A549	lung
48	chr10:61591800-61609000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr10:61592000-61600400	Weak transcription	Fetal Muscle Trunk	muscle

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