Variant report

Variant	rs7088755
Chromosome Location	chr10:61585672-61585673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10458645	0.85[JPT][hapmap]
rs10821604	0.86[JPT][hapmap]
rs10821607	0.86[JPT][hapmap]
rs10994021	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994022	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149661	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1149662	0.95[ASN][1000 genomes]
rs1149663	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11815103	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12244844	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12252428	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261734	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1621496	0.80[JPT][hapmap]
rs1664284	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1664285	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1684929	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914097	0.91[EUR][1000 genomes]
rs16914233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709342	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709343	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709344	0.94[ASN][1000 genomes]
rs1871637	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1871638	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2120989	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2120990	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2271562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2440926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2458663	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2458664	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106569	0.82[ASN][1000 genomes]
rs3793878	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3793882	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3844161	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3851247	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851248	0.82[ASN][1000 genomes]
rs3851249	0.87[CEU][hapmap]
rs3862860	0.81[ASN][1000 genomes]
rs3862861	0.82[ASN][1000 genomes]
rs3999569	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3999570	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948372	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948373	0.82[ASN][1000 genomes]
rs4948374	0.85[JPT][hapmap]
rs4948375	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs55706286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55842846	0.81[ASN][1000 genomes]
rs55958518	0.81[ASN][1000 genomes]
rs56692362	0.81[ASN][1000 genomes]
rs57032269	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57348988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848702	0.81[ASN][1000 genomes]
rs6479653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479654	0.86[JPT][hapmap]
rs6479658	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479660	0.80[ASN][1000 genomes]
rs6479661	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6479662	0.82[ASN][1000 genomes]
rs68045193	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068104	0.81[ASN][1000 genomes]
rs7068247	0.82[ASN][1000 genomes]
rs7074685	0.82[ASN][1000 genomes]
rs7078533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7079228	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7079588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7080447	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088808	0.81[ASN][1000 genomes]
rs7088886	0.85[JPT][hapmap]
rs7092259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809579	0.89[EUR][1000 genomes]
rs72817923	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908517	0.86[JPT][hapmap]
rs7910256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916673	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917071	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7920049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7920403	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9663498	0.81[JPT][hapmap]
rs9664183	0.91[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
3	chr10:61571000-61591200	Weak transcription	NHEK	skin
4	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
5	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:61571600-61585800	Weak transcription	Lung	lung
7	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
10	chr10:61571600-61609200	Weak transcription	NHLF	lung
11	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
12	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
13	chr10:61572400-61589200	Weak transcription	K562	blood
14	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
15	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:61574200-61586200	Weak transcription	Placenta	Placenta
20	chr10:61574200-61589000	Weak transcription	Liver	Liver
21	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:61574600-61588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:61574600-61589000	Weak transcription	HMEC	breast
24	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
25	chr10:61574800-61587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:61576000-61586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
29	chr10:61578000-61585800	Weak transcription	Gastric	stomach
30	chr10:61578000-61586400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:61578000-61590600	Weak transcription	NH-A	brain
33	chr10:61578000-61590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:61578000-61591400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:61578200-61585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:61578200-61589600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:61578200-61590400	Weak transcription	Osteobl	bone
39	chr10:61578200-61590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:61578200-61591200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:61578200-61591400	Weak transcription	Esophagus	oesophagus
42	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
44	chr10:61578400-61585800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:61578400-61586200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr10:61578400-61591200	Weak transcription	HSMM	muscle
47	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:61578600-61585800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:61578600-61585800	Weak transcription	Thymus	Thymus
50	chr10:61578600-61587800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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