Variant report

Variant	rs16914233
Chromosome Location	chr10:61591563-61591564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61580754..61584536-chr10:61589031..61592298,3	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10458645	0.85[JPT][hapmap]
rs10821604	0.86[JPT][hapmap]
rs10821607	0.85[JPT][hapmap]
rs10994021	0.87[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994022	0.93[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994027	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10994031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149660	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149661	0.95[ASN][1000 genomes]
rs1149662	0.95[ASN][1000 genomes]
rs1149663	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11815103	0.86[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12244844	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12252428	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261734	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1664284	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1664285	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1684929	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914097	0.91[EUR][1000 genomes]
rs1709342	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709343	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709344	0.94[ASN][1000 genomes]
rs1871637	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1871638	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2120989	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2120990	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2271562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2440926	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2458663	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2458664	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106569	0.82[ASN][1000 genomes]
rs3793878	0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3793882	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3844161	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3851247	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851248	0.82[ASN][1000 genomes]
rs3862860	0.81[ASN][1000 genomes]
rs3862861	0.82[ASN][1000 genomes]
rs3999569	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3999570	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948372	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948373	0.82[ASN][1000 genomes]
rs4948374	0.85[JPT][hapmap]
rs4948375	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs55706286	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55842846	0.81[ASN][1000 genomes]
rs55958518	0.81[ASN][1000 genomes]
rs56692362	0.81[ASN][1000 genomes]
rs57032269	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57348988	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848702	0.81[ASN][1000 genomes]
rs6479653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479654	0.86[JPT][hapmap]
rs6479658	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479660	0.80[ASN][1000 genomes]
rs6479661	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6479662	0.82[ASN][1000 genomes]
rs68045193	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068104	0.81[ASN][1000 genomes]
rs7068247	0.82[ASN][1000 genomes]
rs7074685	0.82[ASN][1000 genomes]
rs7078533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7079228	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7079588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7080447	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088808	0.81[ASN][1000 genomes]
rs7088886	0.85[JPT][hapmap]
rs7092259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809579	0.92[EUR][1000 genomes]
rs72817923	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895724	0.87[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908517	0.85[JPT][hapmap]
rs7910256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916673	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917071	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7920049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7920403	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9663498	0.80[JPT][hapmap]
rs9664183	0.90[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
2	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
3	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
5	chr10:61571600-61609200	Weak transcription	NHLF	lung
6	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
7	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
8	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
11	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
14	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:61579600-61591800	Weak transcription	HUVEC	blood vessel
16	chr10:61579800-61595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:61580000-61595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
23	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:61583000-61591800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:61583200-61595400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
28	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:61583400-61592600	Strong transcription	Dnd41	blood
30	chr10:61584000-61591800	Strong transcription	Primary T cells from cord blood	blood
31	chr10:61584400-61591800	Strong transcription	Primary B cells from cord blood	blood
32	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:61585000-61592000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:61586200-61597800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:61586400-61591800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr10:61586400-61593600	Weak transcription	Psoas Muscle	Psoas
39	chr10:61586400-61594600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:61586400-61595000	Weak transcription	Thymus	Thymus
41	chr10:61586400-61606600	Weak transcription	Gastric	stomach
42	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:61586600-61593600	Weak transcription	Right Ventricle	heart
44	chr10:61587000-61612000	Weak transcription	Ovary	ovary
45	chr10:61587400-61591800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:61587400-61592400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:61587400-61594400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:61587800-61592200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:61588000-61592200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:61588400-61591600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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