Variant report

Variant	rs11815103
Chromosome Location	chr10:61595877-61595878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61595408..61597026-chr10:61643896..61645826,2	MCF-7	breast:
2	chr10:61594610..61596651-chr10:61661878..61664205,2	K562	blood:
3	chr10:61593876..61596694-chr10:61598582..61600654,2	K562	blood:
4	chr10:61593800..61596584-chr10:61665153..61667297,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10994021	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10994022	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10994026	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10994030	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1149661	0.82[AMR][1000 genomes]
rs1149663	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12244844	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12252428	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12261734	0.93[EUR][1000 genomes]
rs1684929	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16914097	0.90[EUR][1000 genomes]
rs16914233	0.86[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1709342	0.86[CHB][hapmap];0.84[AMR][1000 genomes]
rs1709343	0.85[CHB][hapmap];0.84[AMR][1000 genomes]
rs1709344	0.84[AMR][1000 genomes]
rs2271562	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2440926	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2458664	0.94[EUR][1000 genomes]
rs3793878	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3793882	0.93[EUR][1000 genomes]
rs3851249	0.87[CEU][hapmap]
rs55706286	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57032269	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57348988	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479653	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479658	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68045193	0.93[EUR][1000 genomes]
rs7078533	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7079588	0.86[CHB][hapmap]
rs7080447	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7088755	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7092259	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72809579	0.90[EUR][1000 genomes]
rs72817923	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7910256	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7916673	0.93[EUR][1000 genomes]
rs7917071	0.93[EUR][1000 genomes]
rs7920049	0.86[CHB][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
3	chr10:61571600-61609200	Weak transcription	NHLF	lung
4	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
5	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
6	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
10	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
16	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
18	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
19	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:61586200-61597800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:61586400-61606600	Weak transcription	Gastric	stomach
25	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:61587000-61612000	Weak transcription	Ovary	ovary
27	chr10:61589000-61598000	Weak transcription	Right Atrium	heart
28	chr10:61589200-61599000	Weak transcription	NHDF-Ad	bronchial
29	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:61591400-61598800	Weak transcription	Osteobl	bone
31	chr10:61591600-61609400	Weak transcription	Brain Germinal Matrix	brain
32	chr10:61591800-61597000	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:61591800-61597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:61591800-61598000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:61591800-61598400	Weak transcription	Placenta	Placenta
36	chr10:61591800-61598400	Weak transcription	HSMM	muscle
37	chr10:61591800-61599000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:61591800-61600800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:61591800-61601400	Weak transcription	Fetal Stomach	stomach
40	chr10:61591800-61603200	Weak transcription	Hela-S3	cervix
41	chr10:61591800-61607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:61591800-61607600	Weak transcription	A549	lung
43	chr10:61591800-61609000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:61592000-61600400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:61592000-61601400	Weak transcription	Fetal Intestine Small	intestine
47	chr10:61592200-61597000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:61592200-61597800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:61592200-61598000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:61592200-61599000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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