Variant report

Variant	rs68045193
Chromosome Location	chr10:61554897-61554898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10821593	0.88[ASN][1000 genomes]
rs10994004	0.88[ASN][1000 genomes]
rs10994005	0.88[ASN][1000 genomes]
rs10994021	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994022	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994026	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10994027	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10994031	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1149660	0.90[EUR][1000 genomes]
rs1149663	0.90[EUR][1000 genomes]
rs11815103	0.93[EUR][1000 genomes]
rs11817729	0.95[ASN][1000 genomes]
rs12242758	0.90[ASN][1000 genomes]
rs12243559	0.87[ASN][1000 genomes]
rs12244844	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12252428	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12261734	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12267686	0.91[ASN][1000 genomes]
rs1684929	0.90[EUR][1000 genomes]
rs16914097	0.97[EUR][1000 genomes]
rs16914233	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1949257	0.88[ASN][1000 genomes]
rs2271562	0.90[EUR][1000 genomes]
rs2440926	0.90[EUR][1000 genomes]
rs2458664	0.90[EUR][1000 genomes]
rs3793878	0.88[EUR][1000 genomes]
rs3793882	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55706286	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55958518	0.98[ASN][1000 genomes]
rs56692362	0.98[ASN][1000 genomes]
rs57032269	0.96[EUR][1000 genomes]
rs57348988	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479653	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479658	0.94[EUR][1000 genomes]
rs7080447	0.90[EUR][1000 genomes]
rs7088755	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7092259	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72809579	0.86[EUR][1000 genomes]
rs72817923	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7895724	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7901952	0.82[ASN][1000 genomes]
rs7910256	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7916673	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917071	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882896	0.88[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61547800-61555000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:61548200-61556200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:61548600-61573000	Strong transcription	Dnd41	blood
9	chr10:61548800-61555400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:61549000-61555200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:61549600-61558400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:61549600-61572000	Strong transcription	Liver	Liver
13	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
14	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
15	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr10:61550000-61555000	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:61550000-61555200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:61550000-61555200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:61550000-61555200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:61550000-61555200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:61550000-61555200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:61550000-61555400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:61550200-61555000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:61550200-61555000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:61550200-61555000	Strong transcription	NHEK	skin
26	chr10:61550200-61555200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:61550200-61558200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:61550200-61559600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:61550400-61555000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:61550400-61555000	Strong transcription	GM12878-XiMat	blood
32	chr10:61550400-61555200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:61550400-61555200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:61550400-61555200	Strong transcription	NH-A	brain
35	chr10:61550400-61555400	Strong transcription	Fetal Thymus	thymus
36	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
37	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:61550600-61555000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:61551400-61555000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:61551400-61561800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr10:61551600-61555000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr10:61551600-61555200	Strong transcription	HSMM	muscle
45	chr10:61551800-61555000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:61551800-61555200	Strong transcription	Brain Anterior Caudate	brain
47	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:61552000-61555200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:61552400-61555200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:61552600-61557000	Weak transcription	Fetal Kidney	kidney

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