Variant report

Variant	rs12267686
Chromosome Location	chr10:61547333-61547334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10458645	0.80[JPT][hapmap]
rs10821593	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821604	0.80[JPT][hapmap]
rs10994004	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994005	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994021	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10994022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10994026	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs10994027	0.84[JPT][hapmap]
rs10994030	0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs10994031	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs1149660	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs11817729	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12242758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12243559	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12261734	0.90[ASN][1000 genomes]
rs16914233	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs1709342	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs1709343	0.86[CHB][hapmap]
rs1871637	0.84[JPT][hapmap]
rs1871638	0.85[JPT][hapmap]
rs1949257	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2120989	0.85[JPT][hapmap]
rs2120990	0.85[JPT][hapmap]
rs2271562	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2440926	0.87[CHB][hapmap]
rs3793878	0.86[CHD][hapmap]
rs3793882	0.90[ASN][1000 genomes]
rs3844161	0.85[JPT][hapmap]
rs3851247	0.85[JPT][hapmap]
rs3999569	0.84[JPT][hapmap]
rs3999570	0.85[JPT][hapmap]
rs4948372	0.85[JPT][hapmap]
rs4948374	0.80[JPT][hapmap]
rs4948375	0.89[JPT][hapmap]
rs55958518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56692362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479653	0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs6479654	0.80[JPT][hapmap]
rs6479661	0.85[JPT][hapmap]
rs68045193	0.91[ASN][1000 genomes]
rs7078533	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7079228	0.85[JPT][hapmap]
rs7079588	0.87[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap]
rs7088755	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs7088886	0.80[JPT][hapmap]
rs7092259	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs7895724	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7901722	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7901952	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7910256	0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs7916673	0.92[ASN][1000 genomes]
rs7917071	0.92[ASN][1000 genomes]
rs7920049	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs7920403	0.85[JPT][hapmap]
rs882896	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9664183	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438914	chr10:61542246-61547444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:61540200-61550400	Weak transcription	NH-A	brain
7	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
13	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
15	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:61540800-61551600	Weak transcription	HSMM	muscle
17	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
19	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
20	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
21	chr10:61544000-61547400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:61544400-61549600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
25	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
28	chr10:61545200-61548000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:61545600-61549600	Weak transcription	Primary B cells from cord blood	blood
31	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
33	chr10:61546000-61548200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:61546000-61548800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61546000-61548800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:61546200-61547800	Weak transcription	Fetal Intestine Small	intestine
37	chr10:61546200-61548800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:61546200-61549600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:61546200-61549600	Weak transcription	Fetal Intestine Large	intestine
40	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:61546200-61551400	Weak transcription	A549	lung
43	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
45	chr10:61546400-61547800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:61546600-61548000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:61546600-61548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:61546600-61548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:61546600-61548200	Weak transcription	Monocytes-CD14+_RO01746	blood

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