Variant report

Variant	rs7916673
Chromosome Location	chr10:61556463-61556464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61556023..61558278-chr10:61560219..61561760,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10821593	0.89[ASN][1000 genomes]
rs10994004	0.89[ASN][1000 genomes]
rs10994005	0.89[ASN][1000 genomes]
rs10994021	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994022	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994026	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10994027	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10994030	0.80[ASN][1000 genomes]
rs10994031	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1149660	0.90[EUR][1000 genomes]
rs1149663	0.90[EUR][1000 genomes]
rs11815103	0.93[EUR][1000 genomes]
rs11817729	0.96[ASN][1000 genomes]
rs12242758	0.91[ASN][1000 genomes]
rs12243559	0.88[ASN][1000 genomes]
rs12244844	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12252428	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12261734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12267686	0.92[ASN][1000 genomes]
rs1684929	0.90[EUR][1000 genomes]
rs16914097	0.97[EUR][1000 genomes]
rs16914233	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1949257	0.89[ASN][1000 genomes]
rs2271562	0.90[EUR][1000 genomes]
rs2440926	0.90[EUR][1000 genomes]
rs2458664	0.90[EUR][1000 genomes]
rs3793878	0.88[EUR][1000 genomes]
rs3793882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55706286	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55958518	0.99[ASN][1000 genomes]
rs56692362	0.99[ASN][1000 genomes]
rs57032269	0.96[EUR][1000 genomes]
rs57348988	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479653	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479658	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs68045193	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7078533	0.80[ASN][1000 genomes]
rs7080447	0.90[EUR][1000 genomes]
rs7088755	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7092259	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72809579	0.86[EUR][1000 genomes]
rs72817923	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895724	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7901952	0.83[ASN][1000 genomes]
rs7910256	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917071	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920049	0.80[ASN][1000 genomes]
rs882896	0.89[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:61548600-61573000	Strong transcription	Dnd41	blood
7	chr10:61549600-61558400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:61549600-61572000	Strong transcription	Liver	Liver
9	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
10	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
11	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:61550200-61558200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:61550200-61559600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
16	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:61551400-61561800	Strong transcription	Primary hematopoietic stem cells	blood
20	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:61552600-61557000	Weak transcription	Fetal Kidney	kidney
22	chr10:61553000-61559400	Weak transcription	Psoas Muscle	Psoas
23	chr10:61553000-61562800	Weak transcription	Gastric	stomach
24	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
26	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:61553200-61557400	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:61553400-61557400	Weak transcription	Esophagus	oesophagus
33	chr10:61553400-61562800	Weak transcription	Lung	lung
34	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
36	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
37	chr10:61553800-61559000	Weak transcription	Fetal Stomach	stomach
38	chr10:61554200-61561200	Weak transcription	HepG2	liver
39	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
40	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
41	chr10:61554400-61556800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:61554400-61556800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:61554400-61556800	Weak transcription	Osteobl	bone
44	chr10:61554400-61557200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:61554400-61557400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:61554400-61557400	Weak transcription	Thymus	Thymus
47	chr10:61554400-61557600	Weak transcription	Left Ventricle	heart
48	chr10:61554400-61558200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:61554400-61559200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:61554400-61559200	Weak transcription	Pancreas	Pancrea

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