Variant report

Variant	rs7910256
Chromosome Location	chr10:61589965-61589966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61589091..61591410-chr10:61664456..61666506,2	K562	blood:
2	chr10:61580754..61584536-chr10:61589031..61592298,3	K562	blood:
3	chr10:61589840..61590404-chr10:61665687..61666437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10458645	0.85[JPT][hapmap]
rs10821604	0.85[JPT][hapmap]
rs10821607	0.85[JPT][hapmap]
rs10994021	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994022	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994027	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994030	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10994031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149661	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1149662	0.95[ASN][1000 genomes]
rs1149663	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11815103	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12244844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12252428	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261734	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1664284	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1664285	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1684929	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914097	0.90[EUR][1000 genomes]
rs16914233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914297	0.89[TSI][hapmap]
rs1709342	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[ASN][1000 genomes]
rs1709343	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709344	0.94[ASN][1000 genomes]
rs1871637	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1871638	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2120989	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2120990	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2271562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2440926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2458663	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2458664	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106569	0.82[ASN][1000 genomes]
rs3793878	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3793882	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3844161	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3851247	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851248	0.82[ASN][1000 genomes]
rs3851249	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs3862860	0.81[ASN][1000 genomes]
rs3862861	0.82[ASN][1000 genomes]
rs3999569	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs3999570	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948372	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948373	0.82[ASN][1000 genomes]
rs4948374	0.85[JPT][hapmap]
rs4948375	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs55706286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55842846	0.81[ASN][1000 genomes]
rs55958518	0.81[ASN][1000 genomes]
rs56692362	0.81[ASN][1000 genomes]
rs57032269	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57348988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848702	0.81[ASN][1000 genomes]
rs6479653	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479654	0.85[JPT][hapmap]
rs6479658	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479660	0.80[ASN][1000 genomes]
rs6479661	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6479662	0.82[ASN][1000 genomes]
rs68045193	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068104	0.81[ASN][1000 genomes]
rs7068247	0.82[ASN][1000 genomes]
rs7074685	0.82[ASN][1000 genomes]
rs7078533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7079228	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7079588	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7080447	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088808	0.81[ASN][1000 genomes]
rs7088886	0.85[JPT][hapmap]
rs7092259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809579	0.90[EUR][1000 genomes]
rs72817923	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895724	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908517	0.84[JPT][hapmap]
rs7914022	0.94[TSI][hapmap]
rs7916673	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917071	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7920049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7920403	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9663498	0.80[JPT][hapmap]
rs9664183	0.90[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
2	chr10:61571000-61591200	Weak transcription	NHEK	skin
3	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
4	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
6	chr10:61571600-61609200	Weak transcription	NHLF	lung
7	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
8	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
9	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
10	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
15	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:61578000-61590600	Weak transcription	NH-A	brain
17	chr10:61578000-61590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:61578000-61591400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:61578200-61590400	Weak transcription	Osteobl	bone
21	chr10:61578200-61590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:61578200-61591200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:61578200-61591400	Weak transcription	Esophagus	oesophagus
24	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
26	chr10:61578400-61591200	Weak transcription	HSMM	muscle
27	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:61579600-61591000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:61579600-61591800	Weak transcription	HUVEC	blood vessel
30	chr10:61579800-61595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:61580000-61590600	Weak transcription	Brain Germinal Matrix	brain
32	chr10:61580000-61595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:61580200-61591200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:61580400-61591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
40	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
42	chr10:61583000-61591800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:61583200-61590600	Weak transcription	Fetal Intestine Small	intestine
44	chr10:61583200-61595400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
46	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:61583400-61592600	Strong transcription	Dnd41	blood
48	chr10:61584000-61591800	Strong transcription	Primary T cells from cord blood	blood
49	chr10:61584400-61591800	Strong transcription	Primary B cells from cord blood	blood
50	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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