Variant report

Variant	rs7914022
Chromosome Location	chr10:61661564-61661565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61654182..61656949-chr10:61658544..61661969,6	MCF-7	breast:
2	chr10:61630078..61632932-chr10:61659731..61661689,2	MCF-7	breast:
3	chr10:61646248..61649681-chr10:61659057..61661794,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10994077	0.81[EUR][1000 genomes]
rs10994080	0.81[EUR][1000 genomes]
rs10994082	0.81[EUR][1000 genomes]
rs10994083	0.84[CHB][hapmap]
rs1149660	0.89[TSI][hapmap]
rs12414601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12414629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16914297	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap]
rs2034200	0.84[CHB][hapmap]
rs3793867	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793870	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851249	0.84[CHB][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs59486952	0.85[EUR][1000 genomes]
rs60411991	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6479653	0.94[TSI][hapmap]
rs6479673	0.84[CHB][hapmap]
rs7069343	0.81[EUR][1000 genomes]
rs7073392	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7079211	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7097246	1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs72811557	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72811562	0.98[EUR][1000 genomes]
rs72816432	0.81[EUR][1000 genomes]
rs7899008	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7902735	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7910256	0.94[TSI][hapmap]
rs9888053	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
3	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
6	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
11	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:61654800-61663800	Weak transcription	HSMM	muscle
16	chr10:61654800-61664000	Weak transcription	NHLF	lung
17	chr10:61655600-61663800	Weak transcription	Osteobl	bone
18	chr10:61656000-61663800	Weak transcription	NH-A	brain
19	chr10:61656200-61661600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:61656200-61663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
23	chr10:61656400-61662800	Weak transcription	Brain Substantia Nigra	brain
24	chr10:61656400-61663200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:61657600-61661800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr10:61657600-61662000	Enhancers	Pancreas	Pancrea
27	chr10:61657600-61662000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:61657600-61663800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:61657600-61664200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:61658200-61662000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:61658200-61663200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:61658400-61664000	Weak transcription	Liver	Liver
33	chr10:61658400-61664000	Weak transcription	Right Atrium	heart
34	chr10:61658600-61664200	Weak transcription	Left Ventricle	heart
35	chr10:61658800-61661800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:61658800-61662000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:61658800-61662000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:61658800-61664000	Weak transcription	Fetal Kidney	kidney
39	chr10:61659000-61662000	Enhancers	Esophagus	oesophagus
40	chr10:61659200-61663400	Weak transcription	Fetal Lung	lung
41	chr10:61659200-61663600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:61659200-61663600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:61659400-61664600	Weak transcription	HSMMtube	muscle
44	chr10:61659600-61661600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr10:61659600-61663400	Weak transcription	Fetal Brain Female	brain
46	chr10:61659800-61661600	Weak transcription	Ovary	ovary
47	chr10:61659800-61662000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:61659800-61663200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:61659800-61663600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:61659800-61663800	Weak transcription	Fetal Brain Male	brain

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