Variant report

Variant	rs7079211
Chromosome Location	chr10:61671598-61671599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61666623..61668608-chr10:61670476..61672736,2	MCF-7	breast:
2	chr10:61664893..61667897-chr10:61669592..61671860,3	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10994077	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10994080	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10994081	0.85[ASN][1000 genomes]
rs10994082	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10994083	0.85[ASN][1000 genomes]
rs1171847	0.85[ASN][1000 genomes]
rs12414601	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12414629	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16914411	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2034200	0.85[ASN][1000 genomes]
rs3793867	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793870	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3851249	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59486952	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60411991	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479673	0.85[ASN][1000 genomes]
rs7069343	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073136	0.88[ASN][1000 genomes]
rs7073392	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094419	0.80[EUR][1000 genomes]
rs72811557	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72811562	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72816432	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7897677	0.81[ASN][1000 genomes]
rs7899008	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902735	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912514	0.86[ASN][1000 genomes]
rs7914022	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9888053	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61669000-61673800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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