Variant report
| Variant | rs1171847 |
|---|---|
| Chromosome Location | chr10:61703856-61703857 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:61695241..61697293-chr10:61702502..61705874,3 | MCF-7 | breast: | |
| 2 | chr10:61665357..61667924-chr10:61701547..61705798,5 | MCF-7 | breast: | |
| 3 | chr10:61703836..61706924-chr10:61718320..61719980,3 | MCF-7 | breast: | |
| 4 | chr10:61703565..61709814-chr10:61724833..61727412,7 | MCF-7 | breast: | |
| 5 | chr10:61665632..61668478-chr10:61702558..61705460,3 | MCF-7 | breast: | |
| 6 | chr10:61702627..61705197-chr10:61707163..61708770,2 | MCF-7 | breast: | |
| 7 | chr10:61702957..61706196-chr10:61723593..61729124,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000108091 | Chromatin interaction |
| ENSG00000235931 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1008887 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10740000 | 0.94[EUR][1000 genomes] |
| rs10994077 | 0.98[ASN][1000 genomes] |
| rs10994080 | 0.99[ASN][1000 genomes] |
| rs10994081 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10994082 | 0.99[ASN][1000 genomes] |
| rs10994083 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16914411 | 0.97[ASN][1000 genomes] |
| rs16914415 | 0.91[ASN][1000 genomes] |
| rs16914427 | 0.90[ASN][1000 genomes] |
| rs2034200 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3851249 | 0.99[ASN][1000 genomes] |
| rs4948377 | 0.83[ASN][1000 genomes] |
| rs4948378 | 0.85[ASN][1000 genomes] |
| rs59486952 | 0.96[ASN][1000 genomes] |
| rs60411991 | 0.85[ASN][1000 genomes] |
| rs6479670 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6479673 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6479675 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7069343 | 0.96[ASN][1000 genomes] |
| rs7073136 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7073392 | 0.84[ASN][1000 genomes] |
| rs7079211 | 0.85[ASN][1000 genomes] |
| rs7094419 | 0.89[ASN][1000 genomes] |
| rs72811557 | 0.90[ASN][1000 genomes] |
| rs72811562 | 0.96[ASN][1000 genomes] |
| rs72816432 | 0.98[ASN][1000 genomes] |
| rs7893603 | 1.00[EUR][1000 genomes] |
| rs7897677 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7899008 | 0.85[ASN][1000 genomes] |
| rs7902735 | 0.85[ASN][1000 genomes] |
| rs7912514 | 0.99[ASN][1000 genomes] |
| rs9888053 | 0.96[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
